| H scores | ||||
| Homo sapiens | GRCh38 assembly, GENCODE 27 transcripts | .tar.gz | ||
| Putative spliced circRNA sequences | ||||
| Homo sapiens | hg19 assembly | fasta | ||
| Mus musculus | mm9 assembly | fasta | ||
| Custom scripts for finding circRNAs | ||||
| find_circ.tar.gz | Scripts used in Memczak et al. (2013) | .tar.gz | ||
| circBase ID cross-references | ||||
| Homo sapiens | .txt | |||
| Mus musculus | .txt | |||
| C. elegans | .txt | |||
| Database schema | ||||
| Homo sapiens | database schema graph for H.sapiens tables | .png | ||
| circRNAs | ||||
| Homo sapiens | all Homo sapiens circRNAs | .txt | .xlsx | .bed |
| Rybak-Wolf 2015 | ||||
| cerebellum | ||||
| diencephalon | ||||
| frontal cortex | ||||
| occipital lobe | ||||
| parietal lobe | ||||
| temporal lobe | ||||
| SH-SY5Y D0 rep1 | ||||
| SH-SY5Y D2 rep1 | ||||
| SH-SY5Y D4 rep1 | ||||
| SH-SY5Y D0 rep2 | ||||
| SH-SY5Y D4 rep2 | ||||
| SH-SY5Y D8 rep2 | ||||
| Jeck 2013 | ||||
| Hs68_control | ||||
| Hs68_RNase | ||||
| Memczak 2013 | ||||
| CD19+ | ||||
| CD34+ | ||||
| HEK293 | ||||
| Neutrophils | ||||
| Salzman 2013 | ||||
| A549 | ||||
| AG04450 | ||||
| BJ | ||||
| GM12878 | ||||
| H1-hESC | ||||
| HeLa S3 | ||||
| HepG2 | ||||
| HMEC | ||||
| HSMM | ||||
| HUVEC | ||||
| K562 | ||||
| MCF-7 | ||||
| NHEK | ||||
| NHLF | ||||
| SK-N-SH RA | ||||
| Zhang 2013 | ||||
| H9 | ||||
| Mus musculus | all Mus musculus circRNAs | .txt | .xlsx | .bed |
| Rybak-Wolf 2015 | ||||
| cerebellum | ||||
| frontal cortex | ||||
| hippocampus | ||||
| olfactory bulb | ||||
| forebrain | ||||
| midbrain | ||||
| hindbrain | ||||
| P19 D0 rep1 | ||||
| P19 D2 rep1 | ||||
| P19 D4 rep1 | ||||
| P19 D12 rep1 | ||||
| P19 D0 rep2 | ||||
| P19 D4 rep2 | ||||
| P19 D12 rep2 | ||||
| primary neurons D1 | ||||
| primary neurons D7 | ||||
| primary neurons D14 | ||||
| primary neurons D21 | ||||
| primary neurons D28 | ||||
| synaptoneurosomes | ||||
| cytoplasm | ||||
| whole-brain lysate | ||||
| Memczak 2013 | ||||
| brain1 | ||||
| brain2 | ||||
| ES | ||||
| head | ||||
| Caenorhabditis elegans | all Caenorhabditis elegans circRNAs | .txt | .xlsx | .bed |
| Memczak 2013 | ||||
| 1cell | ||||
| 2cell | ||||
| fem1 | ||||
| spe9 | ||||
| sperm_act | ||||
| sperm | ||||
| Ivanov 2015 | ||||
| Latimeria chalumnae | all Latimeria chalumnae circRNAs | .txt | .xlsx | .bed |
| Nitsche 2013 | ||||
| muscle | ||||
| Latimeria menadoensis | all Latimeria menadoensis circRNAs | .txt | .xlsx | .bed |
| Nitsche 2013 | ||||
| liver | ||||
| testis | ||||
