| ID | hsa_circ_0001946 | |||||
| Alias | CDR1as | |||||
| Position | chrX:139865339-139866824 | |||||
| Strand | + | |||||
| Genomic length | 1485 | |||||
| Spliced sequence length | 1485 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_004065 | |||||
| Gene symbol | CDR1 | |||||
| Experimental exidence | ||||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Maass2017 | chondrocytes | 9 | 8 | 0 | 0 | vena_cava | 37 | 25 | 0 | 0 | VSMC | 5 | 5 | 0 | 0 | muscle | 33 | 16 | 0 | 0 | adipose | 61 | 31 | 0 | 0 | umbilical_cord | 44 | 27 | 0 | 0 | cortex | 47 | 25 | 0 | 0 | MSC | 8 | 6 | 0 | 0 | right_atrium | 17 | 14 | 0 | 0 |
| Memczak2013 | HEK293 | 3 | 3 | 0 | 0 | |
| Rybak2015 | SY5Y_exp2_D0 | 7 | 7 | 0 | 0 | cerebellum | 712 | 265 | 2 | 0 | Sy5y_exp1_D0 | 2 | 2 | 0 | 0 | frontal_cortex | 264 | 84 | 0 | 0 | parietal_lobe | 820 | 215 | 0 | 0 | temporal_lobe | 285 | 87 | 0 | 0 | occipital_lobe | 482 | 138 | 0 | 0 | SY5Y_exp2_D4 | 7 | 6 | 0 | 0 | diencephalon | 217 | 113 | 0 | 0 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||