| ID | hsa_circ_0001756 | |||||
| Alias | hsa_circ_000012 | |||||
| Position | chr7:139415730-139416814 | |||||
| Strand | - | |||||
| Genomic length | 1084 | |||||
| Spliced sequence length | 1084 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_001113239 | |||||
| Gene symbol | HIPK2 | |||||
| Experimental exidence | ||||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Jeck2013 | Hs68_control | 38 | 32 | 16 | 25 | Hs68_RNase | 462 | 173 | 30 | 6 |
| Rybak2015 | SY5Y_exp2_D0 | 9 | 9 | 19 | 14 | diencephalon | 44 | 36 | 31 | 31 | parietal_lobe | 38 | 31 | 45 | 26 | Sy5y_exp1_D2 | 16 | 10 | 12 | 8 | occipital_lobe | 53 | 25 | 6 | 14 | frontal_cortex | 58 | 28 | 9 | 18 | temporal_lobe | 11 | 9 | 6 | 13 | Sy5y_exp1_D4 | 6 | 6 | 17 | 18 | SY5Y_exp2_D8 | 4 | 4 | 18 | 9 | Sy5y_exp1_D0 | 13 | 11 | 15 | 23 | SY5Y_exp2_D4 | 8 | 8 | 7 | 12 | cerebellum | 27 | 19 | 40 | 31 |
| Salzman2013 | Hsmm | 85 | 11 | 19 | 24 | Hepg2 | 217 | 36 | 52 | 18 | A549 | 127 | 54 | 23 | 29 | Huvec | 39 | 16 | 31 | 9 | Bj | 26 | 11 | 5 | 6 | Ag04450 | 241 | 93 | 92 | 85 | Helas3 | 150 | 49 | 49 | 16 | Nhek | 111 | 26 | 31 | 28 | Mcf7 | 49 | 8 | 17 | 16 | K562 | 119 | 83 | 40 | 53 | Nhlf | 98 | 12 | 17 | 7 | Sknshra | 176 | 60 | 36 | 40 | Gm12878 | 203 | 74 | 43 | 41 | H1hesc | 120 | 33 | 28 | 27 |
| Maass2017 | chondrocytes | 2 | 2 | 0 | 2 | right_atrium | 2 | 2 | 6 | 13 | adipose | 2 | 2 | 13 | 6 | platelets | 4 | 4 | 3 | 4 | EPC | 2 | 2 | 2 | 7 |
| Memczak2013 | neutr | 1 | 1 | 4 | 0 | HEK293 | 1 | 1 | 2 | 4 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||