| ID | hsa_circ_0001522 | |||||
| Alias | hsa_circ_002171 | |||||
| Position | chr5:122881110-122893258 | |||||
| Strand | + | |||||
| Genomic length | 12148 | |||||
| Spliced sequence length | 536 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_001044723 | |||||
| Gene symbol | CSNK1G3 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Memczak2013 | cd_19 | 53 | 17 | 8 | 2 | neutr | 4 | 1 | 0 | 1 | cd_34 | 23 | 3 | 0 | 0 |
| Rybak2015 | occipital_lobe | 1343 | 205 | 80 | 101 | Sy5y_exp1_D4 | 9 | 8 | 8 | 15 | cerebellum | 497 | 172 | 83 | 100 | SY5Y_exp2_D0 | 9 | 8 | 7 | 11 | frontal_cortex | 2043 | 247 | 71 | 111 | Sy5y_exp1_D0 | 11 | 9 | 6 | 12 | SY5Y_exp2_D4 | 4 | 4 | 0 | 10 | SY5Y_exp2_D8 | 5 | 5 | 0 | 7 | diencephalon | 467 | 168 | 63 | 91 | Sy5y_exp1_D2 | 15 | 13 | 7 | 14 | parietal_lobe | 497 | 139 | 59 | 63 | temporal_lobe | 749 | 124 | 35 | 51 |
| Salzman2013 | Huvec | 8 | 2 | 4 | 17 | K562 | 16 | 13 | 18 | 31 | H1hesc | 31 | 15 | 23 | 42 | Hepg2 | 10 | 6 | 1 | 17 | Nhek | 45 | 16 | 18 | 43 | A549 | 14 | 12 | 9 | 18 | Sknshra | 13 | 11 | 11 | 28 | Bj | 13 | 9 | 6 | 22 | Gm12878 | 51 | 28 | 12 | 25 | Ag04450 | 47 | 33 | 11 | 35 | Helas3 | 8 | 6 | 7 | 24 |
| Maass2017 | neutophils | 5 | 5 | 0 | 0 | right_atrium | 5 | 4 | 0 | 3 | vena_cava | 7 | 7 | 0 | 2 | WAS2 | 13 | 13 | 4 | 11 | platelets | 44 | 24 | 0 | 2 | fibroblasts | 2 | 2 | 2 | 6 | osteocytes | 2 | 2 | 0 | 3 | muscle | 2 | 2 | 0 | 2 | HUAEC | 3 | 3 | 3 | 6 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||