| ID | hsa_circ_0001478 | |||||
| Alias | hsa_circ_000955 | |||||
| Position | chr5:40764615-40777688 | |||||
| Strand | - | |||||
| Genomic length | 13073 | |||||
| Spliced sequence length | 1353 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_206907 | |||||
| Gene symbol | PRKAA1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Memczak2013 | HEK293 | 1 | 1 | 6 | 7 | neutr | 2 | 1 | 4 | 6 |
| Salzman2013 | Ag04450 | 1 | 1 | 70 | 62 | Gm12878 | 5 | 4 | 8 | 27 | K562 | 9 | 7 | 31 | 116 | A549 | 4 | 2 | 20 | 29 | Helas3 | 1 | 1 | 13 | 30 | Hepg2 | 2 | 1 | 10 | 23 | Huvec | 6 | 1 | 18 | 39 | Sknshra | 4 | 2 | 20 | 35 |
| Maass2017 | platelets | 2 | 2 | 6 | 4 | |
| Rybak2015 | parietal_lobe | 8 | 8 | 52 | 82 | cerebellum | 23 | 15 | 42 | 90 | Sy5y_exp1_D0 | 3 | 3 | 19 | 14 | temporal_lobe | 15 | 8 | 38 | 53 | occipital_lobe | 34 | 15 | 43 | 85 | diencephalon | 12 | 12 | 33 | 67 | frontal_cortex | 54 | 25 | 57 | 106 | Sy5y_exp1_D2 | 5 | 3 | 14 | 17 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||