| ID | hsa_circ_0001258 | |||||
| Alias | hsa_circ_001973 | |||||
| Position | chr22:50810448-50832564 | |||||
| Strand | + | |||||
| Genomic length | 22116 | |||||
| Spliced sequence length | 374 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_001242899 | |||||
| Gene symbol | PPP6R2 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Memczak2013 | neutr | cd_34 | 15 | 2 | 1 | 0 | cd_19 | 2 | 2 | 2 | 1 |
| Maass2017 | vena_cava | 3 | 3 | 0 | 2 | platelets | 5 | 5 | 2 | 0 | cortex | 2 | 2 | 0 | 4 |
| Salzman2013 | Sknshra | 7 | 6 | 0 | 72 | Ag04450 | 9 | 6 | 0 | 56 | Huvec | 1 | 1 | 1 | 52 | Gm12878 | 5 | 4 | 1 | 29 | K562 | 20 | 17 | 3 | 61 | H1hesc | 6 | 2 | 4 | 65 | Helas3 | A549 | 6 | 3 | 0 | 34 | Bj | 9 | 4 | 0 | 51 | Nhek | 4 | 2 | 1 | 53 |
| Rybak2015 | diencephalon | 207 | 113 | 133 | 110 | SY5Y_exp2_D0 | 3 | 3 | 12 | 15 | Sy5y_exp1_D4 | 4 | 4 | 11 | 11 | Sy5y_exp1_D2 | 5 | 4 | 14 | 27 | occipital_lobe | 429 | 141 | 145 | 109 | parietal_lobe | 160 | 92 | 123 | 131 | temporal_lobe | 330 | 93 | 83 | 86 | Sy5y_exp1_D0 | 9 | 8 | 8 | 8 | cerebellum | 98 | 71 | 124 | 113 | frontal_cortex | 537 | 138 | 109 | 117 |
| Jeck2013 | Hs68_RNase | 105 | 61 | 10 | 61 | Hs68_control | 12 | 9 | 23 | 54 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||