| ID | hsa_circ_0001116 | |||||
| Alias | hsa_circ_002163 | |||||
| Position | chr2:239090705-239093928 | |||||
| Strand | - | |||||
| Genomic length | 3223 | |||||
| Spliced sequence length | 411 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_030768 | |||||
| Gene symbol | ILKAP | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Jeck2013 | Hs68_RNase | 135 | 66 | 51 | 53 | Hs68_control | 16 | 11 | 50 | 49 |
| Maass2017 | vena_cava | 3 | 3 | 0 | 0 | platelets | 2 | 2 | 0 | 0 | osteocytes | 2 | 2 | 2 | 2 | neutophils | 3 | 3 | 0 | 0 | WAS2 | 2 | 2 | 5 | 7 | cortex | 2 | 2 | 2 | 0 |
| Salzman2013 | K562 | 41 | 26 | 14 | 38 | Huvec | Bj | Sknshra | 8 | 5 | 1 | 10 | Helas3 | 1 | 1 | 10 | 27 | Nhek | 12 | 5 | 7 | 20 | H1hesc | 1 | 1 | 9 | 13 | Mcf7 | Gm12878 | 13 | 7 | 7 | 18 | A549 | Ag04450 | 12 | 11 | 21 | 23 |
| Rybak2015 | temporal_lobe | 404 | 120 | 30 | 42 | frontal_cortex | 817 | 195 | 58 | 84 | SY5Y_exp2_D4 | 3 | 3 | 9 | 7 | Sy5y_exp1_D4 | 3 | 3 | 10 | 15 | occipital_lobe | 632 | 189 | 37 | 39 | cerebellum | 179 | 101 | 32 | 36 | parietal_lobe | 226 | 124 | 33 | 40 | Sy5y_exp1_D0 | 6 | 4 | 16 | 14 | Sy5y_exp1_D2 | 5 | 4 | 11 | 15 | diencephalon | 227 | 133 | 26 | 41 |
| Memczak2013 | HEK293 | 2 | 2 | 6 | 2 | cd_19 | 7 | 3 | 0 | 0 | neutr | 2 | 1 | 0 | 0 | cd_34 | 52 | 8 | 0 | 2 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||