| ID | hsa_circ_0001017 | |||||
| Alias | hsa_circ_002020 | |||||
| Position | chr2:61749745-61761038 | |||||
| Strand | - | |||||
| Genomic length | 11293 | |||||
| Spliced sequence length | 307 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_003400 | |||||
| Gene symbol | XPO1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | parietal_lobe | 453 | 141 | 128 | 122 | frontal_cortex | 1469 | 246 | 150 | 149 | Sy5y_exp1_D2 | 18 | 14 | 37 | 32 | Sy5y_exp1_D4 | 17 | 13 | 35 | 23 | SY5Y_exp2_D0 | 9 | 7 | 40 | 19 | Sy5y_exp1_D0 | 29 | 19 | 44 | 20 | SY5Y_exp2_D4 | 8 | 6 | 31 | 24 | diencephalon | 321 | 135 | 140 | 156 | temporal_lobe | 903 | 167 | 100 | 126 | occipital_lobe | 1150 | 232 | 160 | 140 | SY5Y_exp2_D8 | 6 | 6 | 30 | 18 | cerebellum | 341 | 158 | 158 | 186 |
| Memczak2013 | HEK293 | 3 | 3 | 14 | 10 | neutr | 8 | 3 | 1 | 5 | cd_19 | 14 | 8 | 5 | 19 |
| Maass2017 | muscle | 3 | 3 | 5 | 2 | decidua | 5 | 4 | 5 | 4 | MSC_047 | 2 | 2 | 11 | 5 | MSC | 2 | 2 | 7 | 5 | vena_cava | 6 | 2 | 9 | 5 | LCL | 8 | 6 | 26 | 16 | ada_scid | 4 | 4 | 18 | 9 | HUAEC | 2 | 2 | 15 | 9 | cortex | 4 | 3 | 5 | 3 | neutophils | 7 | 3 | 3 | 0 | osteocytes | 2 | 2 | 10 | 3 | WAS2 | 20 | 10 | 26 | 18 | adipose | 4 | 4 | 12 | 5 | VSMC | 3 | 2 | 9 | 4 | platelets | 82 | 31 | 6 | 11 | right_atrium | 3 | 3 | 0 | 2 |
| Salzman2013 | Huvec | 9 | 2 | 53 | 13 | Gm12878 | 147 | 72 | 129 | 50 | Sknshra | 48 | 29 | 74 | 43 | Hepg2 | 34 | 11 | 102 | 5 | Nhek | 44 | 18 | 114 | 41 | Bj | 25 | 10 | 47 | 8 | Ag04450 | 73 | 33 | 94 | 40 | Helas3 | 21 | 11 | 90 | 18 | A549 | 40 | 21 | 121 | 38 | H1hesc | 78 | 35 | 217 | 51 | K562 | 398 | 188 | 427 | 314 |
| Jeck2013 | Hs68_RNase | 352 | 99 | 0 | 1 | Hs68_control | 33 | 26 | 135 | 74 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||