| ID | hsa_circ_0000799 | |||||
| Alias | hsa_circ_001730 | |||||
| Position | chr17:65941524-65972074 | |||||
| Strand | + | |||||
| Genomic length | 30550 | |||||
| Spliced sequence length | 2026 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_182641 | |||||
| Gene symbol | BPTF | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | SY5Y_exp2_D8 | 9 | 9 | 19 | 12 | diencephalon | 31 | 22 | 7 | 64 | SY5Y_exp2_D4 | 14 | 12 | 18 | 8 | Sy5y_exp1_D4 | 21 | 16 | 21 | 18 | occipital_lobe | 25 | 15 | 9 | 49 | Sy5y_exp1_D2 | 26 | 19 | 18 | 16 | frontal_cortex | 48 | 25 | 11 | 53 | cerebellum | 32 | 25 | 12 | 54 | parietal_lobe | 52 | 33 | 25 | 46 | SY5Y_exp2_D0 | 16 | 11 | 25 | 14 | Sy5y_exp1_D0 | 27 | 21 | 19 | 21 | temporal_lobe | 62 | 24 | 7 | 64 |
| Memczak2013 | neutr | 4 | 1 | 0 | 1 | HEK293 | cd_34 | 6 | 2 | 0 | 0 |
| Maass2017 | right_atrium | 6 | 6 | 0 | 3 | fibroblasts | 3 | 3 | 0 | 2 | platelets | 8 | 6 | 0 | 0 | HUAEC | 2 | 2 | 4 | 5 | adipose | 5 | 4 | 2 | 3 | LCL | 4 | 3 | 5 | 0 | cortex | 2 | 2 | 0 | 3 | WAS2 | 15 | 11 | 7 | 4 | ada_scid | 2 | 2 | 0 | 0 | umbilical_cord | 3 | 3 | 0 | 0 |
| Salzman2013 | K562 | 19 | 13 | 40 | 14 | Gm12878 | 27 | 18 | 44 | 18 | Mcf7 | 53 | 18 | 22 | 0 | Bj | 29 | 11 | 7 | 1 | Helas3 | 31 | 20 | 52 | 5 | Ag04450 | 41 | 26 | 15 | 9 | Hepg2 | 23 | 13 | 42 | 4 | H1hesc | 16 | 11 | 123 | 10 | Huvec | 19 | 5 | 40 | 0 | Sknshra | 79 | 36 | 35 | 10 | A549 | 79 | 40 | 35 | 4 | Nhek | 46 | 16 | 11 | 4 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||