| ID | hsa_circ_0000780 | |||||
| Alias | hsa_circ_002147 | |||||
| Position | chr17:45741524-45752148 | |||||
| Strand | + | |||||
| Genomic length | 10624 | |||||
| Spliced sequence length | 1126 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_002265 | |||||
| Gene symbol | KPNB1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | temporal_lobe | 7 | 6 | 116 | 82 | cerebellum | 13 | 13 | 172 | 146 | parietal_lobe | 7 | 6 | 145 | 110 | diencephalon | 29 | 23 | 181 | 143 | occipital_lobe | 30 | 18 | 194 | 133 | frontal_cortex | 44 | 32 | 189 | 132 |
| Salzman2013 | Mcf7 | Ag04450 | 27 | 16 | 132 | 184 | Hepg2 | Nhek | 22 | 8 | 146 | 165 | A549 | 17 | 6 | 112 | 163 | K562 | 86 | 49 | 432 | 475 | H1hesc | 46 | 15 | 183 | 218 | Bj | 8 | 2 | 57 | 117 | Gm12878 | 41 | 18 | 148 | 168 | Hsmm | 18 | 1 | 13 | 42 | Sknshra | 11 | 5 | 121 | 133 |
| Maass2017 | chondrocytes | 2 | 2 | 7 | 9 | |
| Memczak2013 | HEK293 | 2 | 2 | 25 | 30 | cd_34 | 38 | 4 | 10 | 19 | cd_19 | 3 | 2 | 7 | 24 |
| Jeck2013 | Hs68_RNase | 125 | 67 | 110 | 120 | Hs68_control | 12 | 10 | 115 | 124 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||