| ID | hsa_circ_0000745 | |||||
| Alias | hsa_circ_000013 | |||||
| Position | chr17:20107645-20109225 | |||||
| Strand | + | |||||
| Genomic length | 1580 | |||||
| Spliced sequence length | 1580 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_001033554 | |||||
| Gene symbol | SPECC1 | |||||
| Experimental exidence | ||||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | diencephalon | 171 | 114 | 65 | 42 | frontal_cortex | 469 | 162 | 25 | 30 | parietal_lobe | 84 | 52 | 46 | 29 | Sy5y_exp1_D2 | 12 | 10 | 0 | 10 | temporal_lobe | 126 | 49 | 6 | 13 | cerebellum | 116 | 87 | 70 | 47 | SY5Y_exp2_D4 | 8 | 6 | 8 | 12 | Sy5y_exp1_D4 | 13 | 10 | 2 | 9 | SY5Y_exp2_D8 | 5 | 5 | 10 | 7 | occipital_lobe | 118 | 59 | 27 | 24 | Sy5y_exp1_D0 | 23 | 12 | 3 | 13 | SY5Y_exp2_D0 | 11 | 9 | 6 | 7 |
| Maass2017 | HUAEC | 10 | 9 | 5 | 7 | adipose | 6 | 5 | 4 | 0 | cortex | 2 | 2 | 0 | 3 | LCL | 11 | 9 | 0 | 5 | ada_scid | 5 | 4 | 0 | 2 | WAS2 | 4 | 3 | 0 | 0 | umbilical_cord | 6 | 5 | 4 | 3 | platelets | 38 | 26 | 0 | 5 | VSMC | 5 | 5 | 4 | 0 | muscle | 2 | 2 | 0 | 0 |
| Memczak2013 | HEK293 | 7 | 7 | 2 | 0 | |
| Salzman2013 | Hepg2 | 190 | 54 | 107 | 2 | Bj | 81 | 43 | 41 | 1 | K562 | 162 | 102 | 11 | 20 | H1hesc | 298 | 125 | 49 | 11 | Sknshra | 129 | 63 | 33 | 4 | Huvec | 33 | 9 | 14 | 1 | Helas3 | 207 | 55 | 138 | 1 | Nhek | 115 | 47 | 33 | 10 | Gm12878 | 121 | 67 | 8 | 3 | Ag04450 | 298 | 115 | 99 | 26 | A549 | 168 | 78 | 108 | 5 | Mcf7 | 138 | 29 | 30 | 3 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||