| ID | hsa_circ_0000567 | |||||
| Alias | hsa_circ_001983 | |||||
| Position | chr14:99924615-99932150 | |||||
| Strand | - | |||||
| Genomic length | 7535 | |||||
| Spliced sequence length | 683 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_199123 | |||||
| Gene symbol | SETD3 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Salzman2013 | Ag04450 | 41 | 28 | 14 | 47 | Huvec | 13 | 5 | 5 | 23 | K562 | 163 | 116 | 6 | 77 | H1hesc | 49 | 32 | 5 | 89 | Gm12878 | 92 | 47 | 3 | 62 | A549 | 38 | 25 | 10 | 71 | Hepg2 | 20 | 11 | 5 | 72 | Sknshra | 15 | 11 | 5 | 48 | Bj | 20 | 9 | 4 | 38 | Helas3 | 24 | 17 | 4 | 66 | Nhek | 22 | 13 | 5 | 53 |
| Maass2017 | right_atrium | 5 | 5 | 4 | 5 | decidua | 4 | 4 | 0 | 0 | VSMC | 2 | 2 | 8 | 4 | WAS2 | 4 | 4 | 8 | 9 | umbilical_cord | 2 | 2 | 0 | 0 | HUAEC | 4 | 4 | 9 | 10 | EPC | 3 | 3 | 4 | 7 | LCL | 2 | 2 | 5 | 3 | platelets | 18 | 13 | 2 | 2 | cortex | 4 | 4 | 0 | 2 | adipose | 6 | 5 | 5 | 9 | vena_cava | 7 | 6 | 4 | 5 |
| Rybak2015 | frontal_cortex | 695 | 179 | 56 | 43 | cerebellum | 307 | 164 | 41 | 67 | SY5Y_exp2_D0 | 15 | 15 | 10 | 14 | Sy5y_exp1_D0 | 38 | 22 | 16 | 24 | temporal_lobe | 209 | 72 | 14 | 20 | Sy5y_exp1_D2 | 30 | 23 | 15 | 21 | occipital_lobe | 504 | 161 | 41 | 21 | SY5Y_exp2_D4 | 17 | 15 | 9 | 12 | Sy5y_exp1_D4 | 16 | 14 | 16 | 20 | diencephalon | 406 | 183 | 43 | 53 | parietal_lobe | 244 | 120 | 35 | 40 | SY5Y_exp2_D8 | 5 | 5 | 4 | 5 |
| Jeck2013 | Hs68_control | 37 | 25 | 35 | 49 | Hs68_RNase | 641 | 158 | 5 | 11 |
| Memczak2013 | HEK293 | 1 | 1 | 0 | 4 | cd_34 | 14 | 3 | 4 | 2 | cd_19 | 6 | 4 | 15 | 2 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||