| ID | hsa_circ_0000219 | |||||
| Alias | hsa_circ_001349 | |||||
| Position | chr10:15858833-15889942 | |||||
| Strand | - | |||||
| Genomic length | 31109 | |||||
| Spliced sequence length | 788 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_024948 | |||||
| Gene symbol | FAM188A | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Maass2017 | WAS2 | 4 | 4 | 5 | 8 | vena_cava | 7 | 6 | 5 | 6 | EPC | 2 | 2 | 2 | 4 | neutophils | 3 | 3 | 0 | 0 | LCL | 2 | 2 | 4 | 0 | platelets | 7 | 5 | 0 | 2 | ada_scid | 2 | 2 | 3 | 2 | muscle | 2 | 2 | 0 | 2 | adipose | 2 | 2 | 0 | 2 | cortex | 6 | 6 | 3 | 4 | right_atrium | 4 | 3 | 3 | 0 |
| Jeck2013 | Hs68_RNase | 215 | 87 | 4 | 19 | Hs68_control | 10 | 6 | 55 | 55 |
| Memczak2013 | cd_19 | 6 | 4 | 2 | 6 | |
| Rybak2015 | SY5Y_exp2_D0 | 5 | 3 | 15 | 13 | cerebellum | 74 | 56 | 62 | 72 | Sy5y_exp1_D0 | 3 | 3 | 13 | 15 | frontal_cortex | 394 | 126 | 101 | 98 | parietal_lobe | 101 | 73 | 70 | 76 | temporal_lobe | 279 | 88 | 51 | 93 | Sy5y_exp1_D2 | 2 | 2 | 13 | 19 | occipital_lobe | 216 | 99 | 99 | 77 | SY5Y_exp2_D4 | 3 | 3 | 12 | 5 | Sy5y_exp1_D4 | 2 | 2 | 15 | 19 | diencephalon | 136 | 82 | 108 | 104 |
| Salzman2013 | K562 | 10 | 9 | 39 | 38 | Gm12878 | 10 | 7 | 20 | 25 | Sknshra | 7 | 5 | 39 | 13 | H1hesc | 1 | 1 | 14 | 15 | Bj | 15 | 7 | 23 | 22 | Nhek | 6 | 2 | 31 | 33 | Huvec | 1 | 1 | 19 | 4 | Helas3 | 3 | 3 | 9 | 3 | A549 | 5 | 3 | 17 | 10 | Ag04450 | 18 | 15 | 29 | 17 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||