| ID | hsa_circ_0006916 | |||||
| Position | chr5:78734832-78752841 | |||||
| Strand | - | |||||
| Genomic length | 18009 | |||||
| Spliced sequence length | 522 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_004272 | |||||
| Gene symbol | HOMER1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Maass2017 | vena_cava | 4 | 4 | 2 | 6 | cortex | 9 | 8 | 6 | 8 | decidua | 5 | 4 | 3 | 5 |
| Jeck2013 | Hs68_RNase | 36 | 29 | 0 | 3 | Hs68_control | 5 | 5 | 18 | 14 |
| Rybak2015 | diencephalon | 414 | 175 | 154 | 117 | Sy5y_exp1_D4 | 4 | 4 | 13 | 10 | SY5Y_exp2_D8 | 4 | 4 | 15 | 11 | Sy5y_exp1_D0 | 9 | 9 | 11 | 6 | parietal_lobe | 331 | 121 | 111 | 93 | SY5Y_exp2_D4 | 2 | 2 | 13 | 10 | temporal_lobe | 417 | 121 | 92 | 63 | occipital_lobe | 539 | 155 | 124 | 96 | frontal_cortex | 980 | 199 | 148 | 124 | cerebellum | 326 | 152 | 119 | 87 |
| Salzman2013 | K562 | 42 | 32 | 139 | 114 | Bj | 6 | 4 | 9 | 8 | H1hesc | 76 | 28 | 85 | 70 | Hepg2 | 4 | 1 | 12 | 4 | Gm12878 | 3 | 2 | 3 | 0 | Helas3 | 11 | 6 | 12 | 7 | Nhek | 2 | 1 | 14 | 9 | Ag04450 | 15 | 8 | 8 | 19 | A549 | 18 | 10 | 20 | 11 | Mcf7 | 3 | 2 | 5 | 8 | Sknshra | 10 | 7 | 21 | 16 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||