| ID | hsa_circ_0005519 | |||||
| Position | chr7:17908029-17915413 | |||||
| Strand | - | |||||
| Genomic length | 7384 | |||||
| Spliced sequence length | 397 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_015132 | |||||
| Gene symbol | SNX13 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | cerebellum | 86 | 60 | 120 | 122 | diencephalon | 95 | 55 | 117 | 113 | frontal_cortex | 271 | 90 | 101 | 118 | Sy5y_exp1_D4 | 2 | 2 | 12 | 17 | parietal_lobe | 76 | 46 | 84 | 95 | Sy5y_exp1_D2 | 3 | 3 | 21 | 14 | Sy5y_exp1_D0 | 6 | 5 | 10 | 15 | occipital_lobe | 193 | 79 | 101 | 141 | temporal_lobe | 71 | 33 | 67 | 53 |
| Maass2017 | vena_cava | 4 | 4 | 7 | 5 | LCL | 2 | 2 | 2 | 5 | adipose | 3 | 2 | 11 | 3 | platelets | 5 | 4 | 2 | 3 |
| Jeck2013 | Hs68_control | 8 | 6 | 74 | 68 | Hs68_RNase | 29 | 23 | 43 | 15 |
| Salzman2013 | Huvec | 1 | 1 | 11 | 25 | Hepg2 | 2 | 2 | 9 | 16 | Gm12878 | 2 | 2 | 33 | 28 | Bj | 2 | 2 | 3 | 20 | Ag04450 | 6 | 5 | 32 | 34 | A549 | 2 | 2 | 18 | 22 | Sknshra | 1 | 1 | 25 | 31 | K562 | 11 | 10 | 102 | 64 | Nhek | 1 | 1 | 25 | 30 | H1hesc | 1 | 1 | 22 | 30 | Helas3 | 5 | 5 | 10 | 36 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||