| ID | hsa_circ_0001897 | |||||
| Alias | hsa_circ_000994 | |||||
| Position | chr9:134381500-134381840 | |||||
| Strand | + | |||||
| Genomic length | 340 | |||||
| Spliced sequence length | 158 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_001077365 | |||||
| Gene symbol | POMT1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | SY5Y_exp2_D8 | 2 | 2 | 3 | 3 | diencephalon | 421 | 140 | 119 | 32 | temporal_lobe | 165 | 61 | 88 | 17 | frontal_cortex | 1134 | 198 | 87 | 29 | cerebellum | 327 | 139 | 78 | 21 | SY5Y_exp2_D0 | 4 | 4 | 3 | 2 | parietal_lobe | 214 | 98 | 76 | 31 | occipital_lobe | 555 | 142 | 64 | 17 |
| Jeck2013 | Hs68_control | 4 | 4 | 10 | 3 | Hs68_RNase | 25 | 21 | 3 | 4 |
| Memczak2013 | cd_19 | 2 | 1 | 0 | 0 | HEK293 | 1 | 1 | 1 | 0 |
| Salzman2013 | Hepg2 | 4 | 4 | 8 | 9 | Bj | 59 | 33 | 4 | 3 | Sknshra | 55 | 30 | 14 | 10 | K562 | 17 | 17 | 6 | 6 | H1hesc | 2 | 2 | 0 | 3 | A549 | 17 | 9 | 10 | 2 | Huvec | 24 | 8 | 2 | 3 | Ag04450 | 56 | 40 | 17 | 11 | Helas3 | 5 | 4 | 6 | 8 | Gm12878 | 17 | 10 | 0 | 4 | Mcf7 | 5 | 3 | 14 | 0 | Nhek | 22 | 10 | 3 | 1 |
| Maass2017 | chondrocytes | 2 | 2 | 2 | 0 | adipose | 3 | 3 | 0 | 0 | WAS2 | 2 | 2 | 0 | 0 | platelets | 5 | 4 | 0 | 0 | umbilical_cord | 2 | 2 | 0 | 0 | ada_scid | 2 | 2 | 0 | 0 | vena_cava | 2 | 2 | 2 | 0 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||