| ID | hsa_circ_0001839 | |||||
| Alias | hsa_circ_001208 | |||||
| Position | chr9:6880011-6893232 | |||||
| Strand | + | |||||
| Genomic length | 13221 | |||||
| Spliced sequence length | 292 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_001146694 | |||||
| Gene symbol | KDM4C | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Maass2017 | vena_cava | 3 | 3 | 0 | 3 | platelets | 8 | 6 | 0 | 0 | decidua | 5 | 4 | 0 | 3 | WAS2 | 15 | 9 | 0 | 12 | ada_scid | 2 | 2 | 0 | 2 | LCL | 7 | 5 | 0 | 2 | cortex | 7 | 5 | 0 | 0 |
| Jeck2013 | Hs68_control | 10 | 8 | 0 | 20 | Hs68_RNase | 304 | 82 | 3 | 3 |
| Salzman2013 | Ag04450 | 30 | 23 | 1 | 9 | Helas3 | 36 | 20 | 1 | 11 | A549 | 9 | 7 | 0 | 11 | Sknshra | 12 | 8 | 1 | 5 | Hepg2 | 37 | 14 | 0 | 8 | Gm12878 | 271 | 101 | 2 | 39 | K562 | 126 | 79 | 0 | 48 | Nhek | 77 | 31 | 0 | 13 | Bj | 35 | 17 | 0 | 6 | H1hesc | 115 | 53 | 1 | 24 |
| Rybak2015 | occipital_lobe | 137 | 58 | 2 | 35 | SY5Y_exp2_D4 | 2 | 2 | 0 | 5 | temporal_lobe | 194 | 63 | 0 | 24 | diencephalon | 247 | 118 | 0 | 45 | frontal_cortex | 286 | 85 | 0 | 43 | parietal_lobe | 149 | 68 | 0 | 58 | Sy5y_exp1_D0 | 8 | 6 | 0 | 6 | Sy5y_exp1_D2 | 2 | 2 | 0 | 6 | cerebellum | 252 | 99 | 0 | 78 | Sy5y_exp1_D4 | 3 | 3 | 0 | 8 |
| Memczak2013 | HEK293 | 2 | 2 | 0 | 1 | cd_19 | 2 | 1 | 0 | 3 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||