| ID | hsa_circ_0001801 | |||||
| Alias | hsa_circ_000018 | |||||
| Position | chr8:52773404-52773806 | |||||
| Strand | - | |||||
| Genomic length | 402 | |||||
| Spliced sequence length | 402 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_052937 | |||||
| Gene symbol | PCMTD1 | |||||
| Experimental exidence | ||||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | diencephalon | 248 | 121 | 84 | 138 | temporal_lobe | 522 | 121 | 41 | 92 | parietal_lobe | 351 | 139 | 80 | 113 | SY5Y_exp2_D4 | 2 | 2 | 6 | 13 | Sy5y_exp1_D4 | 10 | 8 | 7 | 8 | cerebellum | 299 | 145 | 123 | 171 | SY5Y_exp2_D0 | 5 | 5 | 13 | 12 | occipital_lobe | 1282 | 243 | 126 | 169 | Sy5y_exp1_D2 | 10 | 10 | 5 | 13 | frontal_cortex | 1435 | 235 | 132 | 170 | Sy5y_exp1_D0 | 17 | 12 | 9 | 5 |
| Memczak2013 | cd_19 | 21 | 12 | 3 | 4 | neutr | 11 | 4 | 1 | 3 | cd_34 | 29 | 4 | 0 | 5 | HEK293 | 1 | 1 | 0 | 1 |
| Maass2017 | neutophils | 5 | 5 | 2 | 12 | EPC | 2 | 2 | 4 | 8 | right_atrium | 5 | 5 | 2 | 9 | umbilical_cord | 2 | 2 | 0 | 6 | muscle | 11 | 10 | 3 | 9 | WAS2 | 5 | 4 | 9 | 10 | platelets | 106 | 41 | 19 | 33 | decidua | 3 | 3 | 3 | 11 | adipose | 21 | 13 | 8 | 9 | vena_cava | 5 | 5 | 5 | 13 |
| Salzman2013 | A549 | 2 | 2 | 10 | 13 | H1hesc | 11 | 8 | 2 | 19 | Huvec | 1 | 1 | 8 | 16 | Helas3 | 8 | 6 | 12 | 7 | Ag04450 | 7 | 6 | 17 | 19 | Gm12878 | 6 | 6 | 2 | 29 | Hepg2 | 10 | 7 | 6 | 4 | Sknshra | 17 | 15 | 16 | 19 | Mcf7 | 4 | 1 | 2 | 2 | K562 | 56 | 39 | 4 | 56 | Hsmm | 3 | 1 | 0 | 0 | Bj | 7 | 7 | 13 | 15 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||