| ID | hsa_circ_0001789 | |||||
| Alias | hsa_circ_000467 | |||||
| Position | chr8:37734626-37735069 | |||||
| Strand | - | |||||
| Genomic length | 443 | |||||
| Spliced sequence length | 443 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_025151 | |||||
| Gene symbol | RAB11FIP1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Memczak2013 | cd_19 | 8 | 7 | 1 | 3 | neutr | 4 | 2 | 11 | 15 |
| Maass2017 | WAS2 | 2 | 2 | 8 | 24 | right_atrium | 3 | 3 | 2 | 8 | vena_cava | 2 | 2 | 0 | 3 | neutophils | 2 | 2 | 11 | 21 |
| Rybak2015 | occipital_lobe | 15 | 10 | 4 | 18 | temporal_lobe | 4 | 4 | 10 | 14 | frontal_cortex | 21 | 13 | 11 | 9 | diencephalon | 12 | 11 | 10 | 19 | cerebellum | 7 | 6 | 12 | 12 | parietal_lobe | 2 | 2 | 12 | 6 |
| Salzman2013 | Nhek | A549 | 3 | 2 | 6 | 53 | Ag04450 | 2 | 2 | 9 | 55 | Hepg2 | 1 | 1 | 23 | 52 | H1hesc | 7 | 6 | 10 | 138 | Gm12878 | 8 | 6 | 14 | 166 | K562 | 33 | 24 | 118 | 363 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||