| ID | hsa_circ_0001730 | |||||
| Alias | hsa_circ_000001 | |||||
| Position | chr7:100410368-100410830 | |||||
| Strand | - | |||||
| Genomic length | 462 | |||||
| Spliced sequence length | 362 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_004444 | |||||
| Gene symbol | EPHB4 | |||||
| Experimental exidence | ||||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Jeck2013 | Hs68_control | 32 | 24 | 76 | 63 | Hs68_RNase | 934 | 213 | 41 | 50 |
| Memczak2013 | neutr | 2 | 1 | 2 | 7 | HEK293 | 3 | 3 | 4 | 2 | cd_19 | 1 | 1 | 0 | 0 |
| Salzman2013 | Bj | 37 | 18 | 23 | 42 | K562 | 75 | 55 | 183 | 76 | Helas3 | 42 | 28 | 57 | 107 | Hsmm | 22 | 5 | 7 | 19 | Mcf7 | 61 | 8 | 18 | 99 | Gm12878 | 1 | 1 | 0 | 0 | H1hesc | 67 | 36 | 123 | 168 | Hepg2 | 62 | 21 | 63 | 118 | Sknshra | 40 | 21 | 67 | 62 | Huvec | 52 | 25 | 144 | 160 | Nhek | 133 | 43 | 111 | 188 | A549 | 53 | 27 | 50 | 64 | Nhlf | 33 | 6 | 4 | 23 | Ag04450 | 73 | 34 | 101 | 71 | Hmec | 1 | 1 | 5 | 2 |
| Maass2017 | EPC | 3 | 3 | 19 | 12 | HUAEC | 5 | 5 | 29 | 15 |
| Rybak2015 | temporal_lobe | 12 | 9 | 13 | 20 | diencephalon | 14 | 14 | 7 | 14 | frontal_cortex | 29 | 16 | 8 | 14 | parietal_lobe | 10 | 10 | 8 | 19 | occipital_lobe | 30 | 15 | 6 | 24 | Sy5y_exp1_D4 | 3 | 3 | 7 | 8 | cerebellum | 36 | 29 | 18 | 31 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||