circBase

ID	hsa_circ_0001727
Alias	hsa_circ_000017
Position	chr7:99621041-99621930
Strand	+
Genomic length	889
Spliced sequence length	668
Annotation	ANNOTATED CDS coding INTERNAL OVCODE OVEXON UTR5
Repeats	None
Best transcript	NM_003439
Gene symbol	ZKSCAN1
Experimental exidence	Memczak2013
Scores	circRNA study	Sample	total reads circular junction	unique reads circular junction	unique reads linear-5' junctions	unique reads linear-3' junctions
	Salzman2013	Gm12878	155	78	7	92
		Helas3	112	60	19	157
		A549	148	75	26	112
		H1hesc	150	80	8	144
		Bj	114	50	27	98
		Hepg2	119	54	13	177
		Sknshra	198	78	54	334
		Nhek	243	84	22	160
		K562	198	127	13	142
		Hsmm	15	3	3	69
		Nhlf	3	2	0	43
		Huvec	39	18	8	121
		Ag04450	134	69	32	128
		Mcf7	47	13	5	155
	Jeck2013	Hs68_control	61	40	38	36
	Jeck2013	Hs68_RNase	1247	257	7	12
	Rybak2015	Sy5y_exp1_D0	37	25	35	40
		temporal_lobe	911	214	28	94
		SY5Y_exp2_D8	7	7	30	35
		parietal_lobe	570	213	54	105
		Sy5y_exp1_D2	22	15	47	43
		SY5Y_exp2_D0	24	19	34	40
		occipital_lobe	1427	352	34	112
		frontal_cortex	2029	345	44	124
		Sy5y_exp1_D4	18	14	41	38
		cerebellum	260	165	44	109
		SY5Y_exp2_D4	9	9	33	30
		diencephalon	425	219	39	107
	Maass2017	HUAEC	2	2	11	4
		adipose	4	4	7	6
		LCL	5	4	4	4
		platelets	5	4	0	0
		EPC	4	4	8	5
		WAS2	7	6	10	17
	Memczak2013	HEK293	2	2	1	10
		cd_34	11	4	0	6
		cd_19	19	9	1	0
Aligned reads	Memczak 2013 circRNA study (pooled samples)