| ID | hsa_circ_0001699 | |||||
| Alias | hsa_circ_001778 | |||||
| Position | chr7:40027197-40041630 | |||||
| Strand | + | |||||
| Genomic length | 14433 | |||||
| Spliced sequence length | 1142 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_003718 | |||||
| Gene symbol | CDK13 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Memczak2013 | cd_19 | 11 | 6 | 6 | 12 | neutr | 1 | 1 | 1 | 5 |
| Salzman2013 | K562 | 10 | 9 | 25 | 24 | Hepg2 | 23 | 6 | 80 | 1 | Sknshra | 11 | 7 | 88 | 23 | Nhek | 8 | 6 | 38 | 15 | Ag04450 | 6 | 3 | 53 | 24 | Gm12878 | 7 | 4 | 31 | 6 |
| Rybak2015 | parietal_lobe | 109 | 73 | 65 | 72 | Sy5y_exp1_D4 | 2 | 2 | 21 | 15 | SY5Y_exp2_D4 | 4 | 4 | 20 | 12 | SY5Y_exp2_D8 | 2 | 2 | 11 | 16 | diencephalon | 156 | 98 | 57 | 81 | temporal_lobe | 200 | 73 | 11 | 42 | Sy5y_exp1_D0 | 3 | 2 | 16 | 14 | occipital_lobe | 236 | 104 | 76 | 96 | cerebellum | 131 | 81 | 73 | 83 | frontal_cortex | 402 | 113 | 52 | 81 | Sy5y_exp1_D2 | 8 | 8 | 12 | 19 | SY5Y_exp2_D0 | 3 | 3 | 15 | 13 |
| Maass2017 | chondrocytes | 3 | 3 | 2 | 0 | adipose | 3 | 3 | 2 | 2 | fibroblasts | 2 | 2 | 0 | 0 | LCL | 3 | 3 | 3 | 4 | MSC_047 | 4 | 3 | 2 | 2 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||