| ID | hsa_circ_0001649 | |||||
| Alias | hsa_circ_001599 | |||||
| Position | chr6:146209155-146216113 | |||||
| Strand | - | |||||
| Genomic length | 6958 | |||||
| Spliced sequence length | 440 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_173082 | |||||
| Gene symbol | SHPRH | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | occipital_lobe | 186 | 80 | 37 | 102 | cerebellum | 54 | 40 | 42 | 103 | Sy5y_exp1_D2 | 4 | 3 | 6 | 10 | SY5Y_exp2_D0 | 2 | 2 | 6 | 13 | parietal_lobe | 68 | 40 | 43 | 103 | temporal_lobe | 167 | 57 | 29 | 89 | diencephalon | 75 | 55 | 33 | 93 | frontal_cortex | 271 | 115 | 31 | 155 | Sy5y_exp1_D0 | 2 | 2 | 9 | 15 |
| Jeck2013 | Hs68_control | Hs68_RNase | 11 | 10 | 0 | 1 |
| Salzman2013 | A549 | 2 | 2 | 4 | 2 | K562 | 22 | 19 | 38 | 28 | Gm12878 | 12 | 5 | 8 | 14 | H1hesc | 4 | 3 | 19 | 29 | Nhek | 4 | 2 | 5 | 7 | Ag04450 | 1 | 1 | 2 | 1 | Sknshra |
| Memczak2013 | cd_19 | 8 | 3 | 1 | 2 | |
| Maass2017 | adipose | 4 | 4 | 3 | 7 | platelets | 9 | 5 | 0 | 0 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||