| ID | hsa_circ_0001550 | |||||
| Alias | hsa_circ_001165 | |||||
| Position | chr5:167915606-167921655 | |||||
| Strand | + | |||||
| Genomic length | 6049 | |||||
| Spliced sequence length | 534 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_002887 | |||||
| Gene symbol | RARS | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Jeck2013 | Hs68_control | 28 | 19 | 113 | 128 | Hs68_RNase | 289 | 104 | 0 | 59 |
| Maass2017 | adipose | 8 | 8 | 8 | 6 | HUAEC | 5 | 5 | 18 | 22 | EPC | 6 | 6 | 7 | 12 | MSC | 2 | 2 | 0 | 4 | WAS2 | 19 | 14 | 19 | 20 | platelets | 22 | 16 | 0 | 8 | osteocytes | 3 | 3 | 17 | 15 | umbilical_cord | 3 | 2 | 0 | 0 | muscle | 5 | 5 | 5 | 3 | vena_cava | 3 | 3 | 11 | 12 | LCL | 3 | 3 | 12 | 17 | cortex | 2 | 2 | 2 | 2 | VSMC | 5 | 4 | 7 | 5 | neutophils | 6 | 5 | 0 | 0 | right_atrium | 2 | 2 | 2 | 12 | decidua | 6 | 6 | 5 | 7 |
| Rybak2015 | Sy5y_exp1_D4 | 16 | 13 | 17 | 31 | parietal_lobe | 275 | 131 | 69 | 138 | Sy5y_exp1_D0 | 30 | 19 | 27 | 53 | temporal_lobe | 1023 | 191 | 101 | 163 | cerebellum | 327 | 164 | 79 | 185 | Sy5y_exp1_D2 | 30 | 24 | 27 | 46 | frontal_cortex | 1445 | 243 | 111 | 231 | occipital_lobe | 846 | 216 | 60 | 196 | diencephalon | 455 | 188 | 135 | 209 | SY5Y_exp2_D0 | 15 | 11 | 19 | 25 | SY5Y_exp2_D4 | 16 | 11 | 19 | 13 |
| Memczak2013 | cd_19 | 3 | 2 | 35 | 2 | neutr | 1 | 1 | 4 | 1 |
| Salzman2013 | Gm12878 | 3 | 2 | 18 | 71 | Nhek | 5 | 3 | 16 | 86 | K562 | 26 | 24 | 92 | 229 | Ag04450 | 6 | 6 | 15 | 69 | Bj | 2 | 2 | 19 | 29 | Helas3 | 1 | 1 | 10 | 19 | Huvec | 1 | 1 | 11 | 33 | A549 | 5 | 5 | 12 | 33 | Sknshra | 9 | 7 | 27 | 36 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||