| ID | hsa_circ_0001546 | |||||
| Alias | hsa_circ_000423 | |||||
| Position | chr5:153413350-153414527 | |||||
| Strand | - | |||||
| Genomic length | 1177 | |||||
| Spliced sequence length | 417 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_018691 | |||||
| Gene symbol | FAM114A2 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | parietal_lobe | 94 | 54 | 47 | 56 | SY5Y_exp2_D0 | 2 | 2 | 6 | 6 | Sy5y_exp1_D2 | 3 | 2 | 12 | 21 | SY5Y_exp2_D4 | 3 | 3 | 6 | 5 | diencephalon | 98 | 72 | 56 | 70 | occipital_lobe | 167 | 67 | 50 | 71 | temporal_lobe | 166 | 55 | 32 | 40 | cerebellum | 137 | 85 | 52 | 52 | frontal_cortex | 282 | 82 | 68 | 96 |
| Memczak2013 | cd_19 | neutr | 3 | 2 | 2 | 0 |
| Salzman2013 | Sknshra | 18 | 15 | 35 | 2 | Huvec | 14 | 3 | 36 | 1 | Hepg2 | Gm12878 | 20 | 11 | 36 | 9 | Helas3 | 8 | 5 | 11 | 5 | Nhek | 15 | 7 | 50 | 19 | A549 | 15 | 7 | 28 | 4 | Bj | 12 | 8 | 30 | 10 | Ag04450 | 8 | 7 | 44 | 26 | K562 | 23 | 17 | 108 | 31 |
| Jeck2013 | Hs68_control | 7 | 5 | 28 | 51 | Hs68_RNase | 269 | 98 | 1 | 71 |
| Maass2017 | umbilical_cord | 2 | 2 | 0 | 0 | vena_cava | 4 | 4 | 3 | 2 | adipose | 10 | 9 | 4 | 6 | platelets | 7 | 6 | 0 | 0 | WAS2 | 3 | 3 | 4 | 11 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||