| ID | hsa_circ_0001535 | |||||
| Alias | hsa_circ_002110 | |||||
| Position | chr5:137320945-137324004 | |||||
| Strand | - | |||||
| Genomic length | 3059 | |||||
| Spliced sequence length | 331 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_001101801 | |||||
| Gene symbol | FAM13B | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Jeck2013 | Hs68_RNase | 236 | 79 | 2 | 5 | Hs68_control | 16 | 9 | 14 | 46 |
| Memczak2013 | cd_19 | 25 | 13 | 2 | 3 | HEK293 | 4 | 3 | 5 | 5 | neutr | 9 | 3 | 4 | 3 |
| Salzman2013 | Ag04450 | 70 | 42 | 11 | 18 | Gm12878 | 86 | 44 | 14 | 11 | Helas3 | 40 | 21 | 7 | 5 | Hsmm | 11 | 3 | 1 | 2 | Nhek | 65 | 27 | 13 | 9 | Huvec | 21 | 10 | 3 | 0 | Mcf7 | 4 | 1 | 0 | 0 | K562 | 217 | 99 | 28 | 52 | Bj | 67 | 31 | 12 | 5 | H1hesc | 62 | 28 | 12 | 6 | Sknshra | 77 | 44 | 20 | 10 | Hepg2 | 30 | 19 | 4 | 2 | A549 | 47 | 27 | 2 | 3 |
| Rybak2015 | cerebellum | 237 | 100 | 27 | 66 | frontal_cortex | 703 | 144 | 30 | 82 | parietal_lobe | 223 | 86 | 34 | 60 | SY5Y_exp2_D4 | 9 | 6 | 9 | 24 | SY5Y_exp2_D8 | 7 | 5 | 11 | 30 | occipital_lobe | 402 | 108 | 27 | 70 | Sy5y_exp1_D0 | 17 | 14 | 9 | 26 | Sy5y_exp1_D4 | 10 | 8 | 12 | 32 | diencephalon | 387 | 123 | 75 | 148 | SY5Y_exp2_D0 | 11 | 7 | 13 | 22 | temporal_lobe | 434 | 98 | 25 | 68 | Sy5y_exp1_D2 | 22 | 15 | 12 | 24 |
| Maass2017 | HUAEC | 6 | 5 | 2 | 2 | adipose | 18 | 12 | 0 | 3 | neutophils | 9 | 7 | 4 | 5 | muscle | 2 | 2 | 0 | 6 | vena_cava | 5 | 3 | 3 | 7 | right_atrium | 4 | 4 | 4 | 6 | decidua | 2 | 2 | 0 | 4 | cortex | 5 | 5 | 0 | 7 | WAS2 | 14 | 7 | 0 | 10 | platelets | 131 | 27 | 5 | 0 | MSC | 2 | 2 | 0 | 0 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||