| ID | hsa_circ_0001460 | |||||
| Alias | hsa_circ_001804 | |||||
| Position | chr4:178274461-178281831 | |||||
| Strand | + | |||||
| Genomic length | 7370 | |||||
| Spliced sequence length | 596 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_018248 | |||||
| Gene symbol | NEIL3 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Memczak2013 | cd_19 | 8 | 6 | 1 | 0 | HEK293 | 2 | 2 | 4 | 5 | neutr | 5 | 2 | 1 | 0 |
| Maass2017 | WAS2 | 5 | 4 | 9 | 7 | MSC_047 | 2 | 2 | 0 | 0 | LCL | 3 | 3 | 0 | 0 | neutophils | 20 | 13 | 0 | 0 | platelets | 13 | 11 | 2 | 0 |
| Salzman2013 | H1hesc | 7 | 6 | 20 | 10 | Ag04450 | 6 | 6 | 7 | 0 | A549 | 22 | 15 | 20 | 15 | Huvec | Nhlf | Nhek | K562 | 5 | 5 | 63 | 24 | Bj | Hepg2 | 5 | 4 | 6 | 5 | Sknshra | 4 | 3 | 3 | 3 | Helas3 | 2 | 2 | 15 | 5 | Gm12878 | 21 | 15 | 19 | 11 |
| Rybak2015 | Sy5y_exp1_D2 | 8 | 7 | 13 | 8 | occipital_lobe | 27 | 19 | 8 | 0 | cerebellum | 15 | 13 | 9 | 0 | temporal_lobe | 33 | 14 | 0 | 0 | diencephalon | 23 | 20 | 0 | 5 | parietal_lobe | 27 | 21 | 5 | 0 | Sy5y_exp1_D4 | 6 | 6 | 11 | 8 | Sy5y_exp1_D0 | 3 | 3 | 15 | 7 | SY5Y_exp2_D0 | 4 | 4 | 10 | 6 | frontal_cortex | 42 | 20 | 6 | 2 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||