| ID | hsa_circ_0001451 | |||||
| Alias | hsa_circ_001988 | |||||
| Position | chr4:153332454-153333681 | |||||
| Strand | - | |||||
| Genomic length | 1227 | |||||
| Spliced sequence length | 1227 | |||||
| Annotation |
| |||||
| Repeats | LINE | |||||
| Best transcript | NM_033632 | |||||
| Gene symbol | FBXW7 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Jeck2013 | Hs68_RNase | 175 | 57 | 0 | 4 | Hs68_control | 27 | 22 | 0 | 5 |
| Rybak2015 | occipital_lobe | 273 | 80 | 0 | 33 | SY5Y_exp2_D4 | 8 | 6 | 0 | 7 | Sy5y_exp1_D2 | 16 | 14 | 0 | 4 | parietal_lobe | 142 | 60 | 0 | 45 | frontal_cortex | 535 | 107 | 0 | 44 | Sy5y_exp1_D4 | 10 | 7 | 0 | 6 | cerebellum | 59 | 42 | 0 | 31 | Sy5y_exp1_D0 | 13 | 8 | 0 | 8 | temporal_lobe | 212 | 46 | 0 | 16 | diencephalon | 105 | 61 | 0 | 36 | SY5Y_exp2_D0 | 8 | 7 | 0 | 6 | SY5Y_exp2_D8 | 3 | 3 | 0 | 3 |
| Salzman2013 | Hepg2 | 24 | 10 | 0 | 1 | Huvec | 26 | 9 | 0 | 9 | K562 | 113 | 77 | 5 | 32 | Hmec | Helas3 | 17 | 7 | 0 | 2 | A549 | 7 | 4 | 0 | 1 | Ag04450 | 18 | 11 | 0 | 6 | H1hesc | 18 | 13 | 0 | 10 | Sknshra | 7 | 5 | 0 | 7 | Bj | 7 | 6 | 0 | 1 | Nhek | 21 | 13 | 0 | 12 | Gm12878 | 109 | 41 | 1 | 20 |
| Memczak2013 | cd_19 | 19 | 10 | 0 | 0 | |
| Maass2017 | LCL | 15 | 10 | 0 | 4 | vena_cava | 4 | 3 | 0 | 0 | osteocytes | 2 | 2 | 0 | 2 | cortex | 7 | 7 | 0 | 0 | ada_scid | 6 | 6 | 0 | 3 | neutophils | 4 | 4 | 0 | 3 | platelets | 19 | 13 | 0 | 0 | HUAEC | 2 | 2 | 0 | 0 | EPC | 3 | 3 | 0 | 0 | right_atrium | 3 | 3 | 0 | 0 | muscle | 2 | 2 | 0 | 0 | fibroblasts | 2 | 2 | 0 | 0 | WAS2 | 35 | 13 | 0 | 11 | adipose | 5 | 4 | 0 | 0 | umbilical_cord | 2 | 2 | 0 | 0 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||