| ID | hsa_circ_0001445 | |||||
| Alias | hsa_circ_000003 | |||||
| Position | chr4:144464661-144465125 | |||||
| Strand | + | |||||
| Genomic length | 464 | |||||
| Spliced sequence length | 269 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_003601 | |||||
| Gene symbol | SMARCA5 | |||||
| Experimental exidence | ||||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | diencephalon | 952 | 249 | 118 | 152 | Sy5y_exp1_D0 | 27 | 20 | 64 | 46 | Sy5y_exp1_D2 | 27 | 20 | 55 | 47 | Sy5y_exp1_D4 | 16 | 13 | 53 | 40 | parietal_lobe | 753 | 201 | 89 | 126 | occipital_lobe | 1566 | 276 | 79 | 147 | frontal_cortex | 2739 | 307 | 115 | 138 | SY5Y_exp2_D4 | 14 | 13 | 33 | 23 | temporal_lobe | 2491 | 341 | 86 | 100 | SY5Y_exp2_D8 | 9 | 8 | 33 | 28 | cerebellum | 748 | 240 | 125 | 153 | SY5Y_exp2_D0 | 12 | 12 | 46 | 40 |
| Memczak2013 | HEK293 | 3 | 3 | 5 | 4 | neutr | 3 | 1 | 3 | 5 | cd_19 | 65 | 26 | 20 | 6 | cd_34 | 7 | 3 | 0 | 0 |
| Maass2017 | osteocytes | 4 | 4 | 9 | 12 | muscle | 11 | 10 | 3 | 4 | fibroblasts | 2 | 2 | 7 | 5 | MSC | 5 | 4 | 6 | 6 | EPC | 5 | 3 | 5 | 5 | ada_scid | 8 | 7 | 7 | 11 | WAS2 | 37 | 21 | 22 | 26 | right_atrium | 9 | 7 | 9 | 12 | LCL | 11 | 6 | 16 | 12 | placenta | 3 | 3 | 10 | 0 | chondrocytes | 3 | 3 | 7 | 7 | umbilical_cord | 2 | 2 | 6 | 2 | decidua | 6 | 6 | 15 | 12 | platelets | 302 | 63 | 0 | 2 | adipose | 4 | 3 | 5 | 6 | cortex | 26 | 16 | 6 | 9 | MSC_047 | 3 | 3 | 10 | 17 | plasma | 10 | 2 | 0 | 0 | vena_cava | 25 | 18 | 15 | 11 | HUAEC | 6 | 6 | 20 | 16 | neutophils | 9 | 8 | 4 | 7 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||