| ID | hsa_circ_0001423 | |||||
| Alias | hsa_circ_000009 | |||||
| Position | chr4:87967317-87968746 | |||||
| Strand | + | |||||
| Genomic length | 1429 | |||||
| Spliced sequence length | 1021 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_001166693 | |||||
| Gene symbol | AFF1 | |||||
| Experimental exidence | ||||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Memczak2013 | HEK293 | 2 | 2 | 2 | 0 | |
| Rybak2015 | frontal_cortex | 24 | 14 | 8 | 0 | temporal_lobe | 28 | 11 | 4 | 0 | occipital_lobe | 3 | 3 | 19 | 2 | SY5Y_exp2_D8 | 2 | 2 | 4 | 0 | Sy5y_exp1_D2 | 2 | 2 | 6 | 2 | cerebellum | 21 | 17 | 52 | 5 | diencephalon | 5 | 5 | 20 | 2 | parietal_lobe | 6 | 6 | 21 | 3 | Sy5y_exp1_D4 | 3 | 3 | 8 | 4 |
| Salzman2013 | A549 | 11 | 8 | 24 | 27 | Sknshra | 19 | 14 | 32 | 25 | Nhek | 13 | 3 | 21 | 11 | H1hesc | 84 | 25 | 28 | 33 | Ag04450 | 50 | 31 | 44 | 27 | Huvec | 10 | 3 | 29 | 28 | Hepg2 | 51 | 17 | 12 | 25 | K562 | 121 | 72 | 63 | 49 | Bj | 16 | 11 | 11 | 18 | Helas3 | 33 | 18 | 18 | 37 | Gm12878 | 62 | 33 | 31 | 41 |
| Jeck2013 | Hs68_RNase | 331 | 131 | 12 | 4 | Hs68_control | 32 | 24 | 49 | 23 |
| Maass2017 | umbilical_cord | 3 | 3 | 0 | 2 | placenta | 2 | 2 | 33 | 13 | WAS2 | 17 | 13 | 31 | 11 | LCL | 9 | 7 | 8 | 6 | chondrocytes | 2 | 2 | 3 | 0 | EPC | 2 | 2 | 9 | 0 | right_atrium | 2 | 2 | 5 | 2 | vena_cava | 7 | 7 | 9 | 2 | ada_scid | 2 | 2 | 24 | 3 | platelets | 10 | 8 | 7 | 2 | adipose | 9 | 9 | 10 | 5 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||