| ID | hsa_circ_0001414 | |||||
| Alias | hsa_circ_000714 | |||||
| Position | chr4:56277780-56284152 | |||||
| Strand | + | |||||
| Genomic length | 6372 | |||||
| Spliced sequence length | 585 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_018475 | |||||
| Gene symbol | TMEM165 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | temporal_lobe | 374 | 113 | 58 | 38 | cerebellum | 289 | 153 | 63 | 85 | SY5Y_exp2_D0 | 2 | 2 | 10 | 33 | Sy5y_exp1_D0 | 10 | 8 | 19 | 47 | occipital_lobe | 864 | 223 | 80 | 90 | frontal_cortex | 1298 | 249 | 130 | 87 | diencephalon | 358 | 181 | 94 | 99 | Sy5y_exp1_D2 | 11 | 9 | 23 | 47 | parietal_lobe | 340 | 145 | 61 | 66 | SY5Y_exp2_D4 | 11 | 8 | 8 | 23 | Sy5y_exp1_D4 | 13 | 12 | 23 | 40 |
| Maass2017 | MSC | 3 | 3 | 5 | 13 | MSC_047 | 2 | 2 | 9 | 21 | chondrocytes | 5 | 5 | 12 | 18 | muscle | 3 | 3 | 0 | 3 | EPC | 3 | 3 | 9 | 16 | adipose | 2 | 2 | 0 | 16 | ada_scid | 2 | 2 | 5 | 11 | HUAEC | 5 | 4 | 19 | 32 | WAS2 | 6 | 6 | 7 | 21 | fibroblasts | 3 | 3 | 7 | 12 | platelets | 68 | 30 | 3 | 3 | HUVEC | 2 | 2 | 0 | 3 | VSMC | 5 | 4 | 5 | 17 | decidua | 2 | 2 | 5 | 14 | umbilical_cord | 2 | 2 | 2 | 7 | cortex | 5 | 4 | 0 | 4 | vena_cava | 6 | 5 | 3 | 3 | osteocytes | 8 | 5 | 9 | 23 |
| Salzman2013 | Nhlf | 1 | 1 | 5 | 19 | Mcf7 | 13 | 3 | 4 | 24 | Hepg2 | 17 | 9 | 30 | 174 | A549 | 20 | 13 | 10 | 65 | Gm12878 | 25 | 16 | 13 | 61 | Hsmm | 6 | 1 | 3 | 23 | Bj | 61 | 36 | 20 | 135 | Sknshra | 41 | 23 | 12 | 95 | H1hesc | 43 | 27 | 16 | 90 | K562 | 61 | 38 | 45 | 206 | Nhek | 38 | 16 | 26 | 142 | Huvec | 22 | 14 | 30 | 169 | Ag04450 | 58 | 44 | 22 | 142 | Helas3 | 14 | 12 | 24 | 104 |
| Memczak2013 | HEK293 | 1 | 1 | 1 | 6 | cd_19 | 1 | 1 | 0 | 5 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||