circBase

ID	hsa_circ_0001380
Alias	hsa_circ_001645
Position	chr3:196118683-196129890
Strand	-
Genomic length	11207
Spliced sequence length	247
Annotation	ANNOTATED CDS coding INTERNAL OVCODE OVEXON
Repeats	None
Best transcript	NM_015562
Gene symbol	UBXN7
Scores	circRNA study	Sample	total reads circular junction	unique reads circular junction	unique reads linear-5' junctions	unique reads linear-3' junctions
	Jeck2013	Hs68_RNase	1295	234	18	13
	Jeck2013	Hs68_control	48	32	36	35
	Salzman2013	A549	26	14	8	15
		Mcf7	15	3	3	5
		Hepg2	28	13	10	20
		Gm12878	144	77	45	21
		Nhek	146	64	33	21
		H1hesc	88	40	65	66
		Bj	38	21	11	13
		K562	266	149	112	76
		Helas3	21	15	7	25
		Huvec	25	11	5	14
		Ag04450	86	53	24	50
		Sknshra	72	43	19	33
	Memczak2013	HEK293	2	2	4	7
		cd_19	6	2	25	7
		neutr	1	1	1	1
	Rybak2015	cerebellum	1376	366	45	89
		Sy5y_exp1_D2	26	18	14	17
		parietal_lobe	2011	311	52	82
		diencephalon	1268	315	47	78
		frontal_cortex	5055	556	60	115
		SY5Y_exp2_D4	10	10	12	11
		SY5Y_exp2_D8	9	7	11	19
		Sy5y_exp1_D0	39	23	12	23
		SY5Y_exp2_D0	12	9	10	15
		Sy5y_exp1_D4	23	18	17	20
		temporal_lobe	2747	314	33	43
		occipital_lobe	2750	408	47	121
	Maass2017	platelets	182	37	2	3
		MSC	4	4	0	0
		vena_cava	32	19	0	3
		muscle	11	8	2	0
		umbilical_cord	4	4	3	0
		osteocytes	6	4	0	0
		chondrocytes	2	2	0	3
		fibroblasts	3	2	0	2
		right_atrium	12	11	4	4
		adipose	15	10	4	2
		MSC_047	6	5	4	6
		decidua	8	8	0	4
		WAS2	53	30	11	18
		EPC	5	5	4	6
		VSMC	3	3	3	0
		HUAEC	3	3	3	10
		cortex	12	10	4	2
		LCL	23	14	6	9
		ada_scid	19	11	9	13
		neutophils	26	18	3	2
Aligned reads	Memczak 2013 circRNA study (pooled samples)