circBase

ID	hsa_circ_0001380
Alias	hsa_circ_001645
Position	chr3:196118683-196129890
Strand	-
Genomic length	11207
Spliced sequence length	247
Annotation	ANNOTATED CDS coding INTERNAL OVCODE OVEXON
Repeats	None
Best transcript	NM_015562
Gene symbol	UBXN7
Scores	circRNA study	Sample	total reads circular junction	unique reads circular junction	unique reads linear-5' junctions	unique reads linear-3' junctions
	Jeck2013	Hs68_control	48	32	36	35
	Jeck2013	Hs68_RNase	1295	234	18	13
	Memczak2013	HEK293	2	2	4	7
		cd_19	6	2	25	7
		neutr	1	1	1	1
	Salzman2013	Gm12878	144	77	45	21
		Helas3	21	15	7	25
		Bj	38	21	11	13
		Sknshra	72	43	19	33
		A549	26	14	8	15
		Nhek	146	64	33	21
		Huvec	25	11	5	14
		K562	266	149	112	76
		Hepg2	28	13	10	20
		H1hesc	88	40	65	66
		Ag04450	86	53	24	50
		Mcf7	15	3	3	5
	Maass2017	WAS2	53	30	11	18
		osteocytes	6	4	0	0
		decidua	8	8	0	4
		platelets	182	37	2	3
		neutophils	26	18	3	2
		HUAEC	3	3	3	10
		LCL	23	14	6	9
		EPC	5	5	4	6
		ada_scid	19	11	9	13
		vena_cava	32	19	0	3
		adipose	15	10	4	2
		fibroblasts	3	2	0	2
		chondrocytes	2	2	0	3
		VSMC	3	3	3	0
		right_atrium	12	11	4	4
		MSC	4	4	0	0
		cortex	12	10	4	2
		MSC_047	6	5	4	6
		muscle	11	8	2	0
		umbilical_cord	4	4	3	0
	Rybak2015	Sy5y_exp1_D2	26	18	14	17
		SY5Y_exp2_D8	9	7	11	19
		cerebellum	1376	366	45	89
		diencephalon	1268	315	47	78
		frontal_cortex	5055	556	60	115
		Sy5y_exp1_D4	23	18	17	20
		occipital_lobe	2750	408	47	121
		SY5Y_exp2_D0	12	9	10	15
		Sy5y_exp1_D0	39	23	12	23
		SY5Y_exp2_D4	10	10	12	11
		temporal_lobe	2747	314	33	43
		parietal_lobe	2011	311	52	82
Aligned reads	Memczak 2013 circRNA study (pooled samples)