| ID | hsa_circ_0001360 | |||||
| Alias | hsa_circ_001922 | |||||
| Position | chr3:169863210-169867032 | |||||
| Strand | - | |||||
| Genomic length | 3822 | |||||
| Spliced sequence length | 258 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_024947 | |||||
| Gene symbol | PHC3 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | occipital_lobe | 25 | 15 | 9 | 78 | diencephalon | 39 | 35 | 47 | 88 | Sy5y_exp1_D2 | 8 | 8 | 2 | 9 | temporal_lobe | 12 | 5 | 3 | 35 | cerebellum | 67 | 56 | 74 | 93 | frontal_cortex | 39 | 20 | 3 | 53 | Sy5y_exp1_D0 | 4 | 3 | 2 | 7 | parietal_lobe | 14 | 12 | 19 | 54 |
| Jeck2013 | Hs68_RNase | 1108 | 232 | 57 | 180 | Hs68_control | 45 | 27 | 60 | 77 |
| Memczak2013 | cd_34 | 16 | 4 | 4 | 0 | HEK293 | 1 | 1 | 5 | 2 |
| Maass2017 | MSC | 2 | 2 | 0 | 0 | adipose | 5 | 5 | 4 | 11 | WAS2 | 3 | 2 | 7 | 12 | platelets | 24 | 19 | 2 | 22 | chondrocytes | 2 | 2 | 2 | 4 | LCL | 2 | 2 | 0 | 4 | vena_cava | 2 | 2 | 0 | 2 |
| Salzman2013 | Helas3 | 679 | 183 | 155 | 119 | Gm12878 | 573 | 143 | 128 | 105 | Nhlf | 231 | 23 | 56 | 27 | Mcf7 | 1291 | 156 | 177 | 49 | Hsmm | 186 | 23 | 54 | 8 | Ag04450 | 322 | 102 | 99 | 77 | K562 | 400 | 177 | 112 | 121 | Huvec | 306 | 50 | 97 | 57 | Nhek | 353 | 78 | 103 | 68 | A549 | 357 | 91 | 73 | 61 | H1hesc | 469 | 106 | 110 | 73 | Sknshra | 299 | 92 | 74 | 45 | Bj | 372 | 97 | 72 | 59 | Hepg2 | 917 | 170 | 158 | 110 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||