| ID | hsa_circ_0001329 | |||||
| Alias | hsa_circ_001512 | |||||
| Position | chr3:119219541-119222868 | |||||
| Strand | + | |||||
| Genomic length | 3327 | |||||
| Spliced sequence length | 323 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_016589 | |||||
| Gene symbol | TIMMDC1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | SY5Y_exp2_D4 | 2 | 2 | 20 | 24 | Sy5y_exp1_D4 | 4 | 3 | 30 | 27 | diencephalon | 22 | 17 | 51 | 104 | occipital_lobe | 80 | 37 | 44 | 104 | cerebellum | 23 | 19 | 49 | 111 | frontal_cortex | 83 | 49 | 52 | 141 | parietal_lobe | 25 | 17 | 42 | 94 | temporal_lobe | 26 | 17 | 16 | 85 | SY5Y_exp2_D0 | 3 | 3 | 26 | 30 |
| Jeck2013 | Hs68_control | 13 | 7 | 93 | 94 | Hs68_RNase | 116 | 59 | 8 | 85 |
| Salzman2013 | Helas3 | 13 | 6 | 38 | 23 | A549 | 6 | 4 | 42 | 46 | Ag04450 | 6 | 6 | 45 | 50 | K562 | 22 | 16 | 65 | 144 | Hepg2 | 13 | 5 | 34 | 37 | Nhek | 23 | 10 | 70 | 87 | H1hesc | 32 | 8 | 62 | 70 | Sknshra | 24 | 15 | 72 | 86 | Bj | 1 | 1 | 24 | 26 | Gm12878 | 19 | 10 | 13 | 44 | Huvec | 9 | 2 | 29 | 32 |
| Maass2017 | HUAEC | 2 | 2 | 11 | 13 | VSMC | 3 | 2 | 7 | 5 | adipose | 5 | 5 | 10 | 6 | vena_cava | 2 | 2 | 11 | 7 | platelets | 9 | 7 | 0 | 4 |
| Memczak2013 | cd_19 | 4 | 2 | 57 | 0 | neutr | 3 | 2 | 3 | 2 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||