| ID | hsa_circ_0001313 | |||||
| Alias | hsa_circ_000374 | |||||
| Position | chr3:56626997-56628056 | |||||
| Strand | + | |||||
| Genomic length | 1059 | |||||
| Spliced sequence length | 468 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_001012506 | |||||
| Gene symbol | CCDC66 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Memczak2013 | cd_34 | neutr | 1 | 1 | 0 | 0 | HEK293 | cd_19 | 9 | 7 | 0 | 0 |
| Jeck2013 | Hs68_control | 15 | 12 | 9 | 14 | Hs68_RNase | 65 | 47 | 0 | 0 |
| Salzman2013 | Sknshra | 13 | 4 | 0 | 0 | H1hesc | 4 | 2 | 1 | 6 | Hepg2 | 7 | 4 | 0 | 0 | Gm12878 | 32 | 12 | 0 | 4 | A549 | Nhek | 2 | 2 | 0 | 2 | Ag04450 | 20 | 11 | 1 | 5 | Helas3 | 4 | 2 | 5 | 2 | Bj | 3 | 2 | 0 | 0 | K562 | 52 | 32 | 3 | 20 |
| Rybak2015 | SY5Y_exp2_D0 | 12 | 11 | 4 | 15 | Sy5y_exp1_D4 | 3 | 3 | 3 | 4 | diencephalon | 110 | 71 | 29 | 22 | temporal_lobe | 115 | 54 | 18 | 8 | parietal_lobe | 90 | 55 | 20 | 21 | SY5Y_exp2_D4 | 2 | 2 | 5 | 8 | Sy5y_exp1_D0 | 9 | 8 | 4 | 5 | frontal_cortex | 406 | 117 | 22 | 14 | Sy5y_exp1_D2 | 6 | 5 | 2 | 12 | cerebellum | 56 | 43 | 31 | 15 | occipital_lobe | 319 | 111 | 27 | 16 |
| Maass2017 | cortex | 2 | 2 | 0 | 0 | platelets | 16 | 11 | 2 | 0 | HUAEC | 4 | 4 | 0 | 0 | neutophils | 3 | 3 | 0 | 0 | adipose | 3 | 3 | 2 | 0 | right_atrium | 2 | 2 | 0 | 4 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||