| ID | hsa_circ_0001296 | |||||
| Alias | hsa_circ_001923 | |||||
| Position | chr3:47719687-47727660 | |||||
| Strand | - | |||||
| Genomic length | 7973 | |||||
| Spliced sequence length | 308 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_003074 | |||||
| Gene symbol | SMARCC1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | occipital_lobe | 40 | 19 | 33 | 194 | Sy5y_exp1_D4 | 3 | 2 | 19 | 33 | temporal_lobe | 94 | 40 | 29 | 123 | diencephalon | 25 | 18 | 39 | 146 | parietal_lobe | 34 | 24 | 43 | 145 | cerebellum | 10 | 10 | 41 | 141 | frontal_cortex | 110 | 52 | 50 | 173 |
| Salzman2013 | K562 | 13 | 9 | 148 | 309 | Sknshra | 20 | 6 | 29 | 177 | Helas3 | 1 | 1 | 12 | 166 | Ag04450 | 11 | 4 | 24 | 159 | A549 | 10 | 5 | 3 | 103 |
| Memczak2013 | cd_34 | 17 | 3 | 0 | 0 | |
| Maass2017 | WAS2 | 2 | 2 | 6 | 9 | |
| Jeck2013 | Hs68_RNase | 48 | 30 | 16 | 75 | Hs68_control | 1 | 1 | 18 | 48 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||