| ID | hsa_circ_0001295 | |||||
| Alias | hsa_circ_001705 | |||||
| Position | chr3:47716964-47727660 | |||||
| Strand | - | |||||
| Genomic length | 10696 | |||||
| Spliced sequence length | 576 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_003074 | |||||
| Gene symbol | SMARCC1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Memczak2013 | cd_19 | 11 | 4 | 4 | 8 | |
| Rybak2015 | temporal_lobe | 24 | 13 | 29 | 58 | diencephalon | 12 | 11 | 39 | 72 | occipital_lobe | 53 | 32 | 33 | 103 | frontal_cortex | 91 | 44 | 50 | 103 | cerebellum | 20 | 16 | 41 | 43 | parietal_lobe | 26 | 20 | 43 | 73 |
| Salzman2013 | Sknshra | 5 | 3 | 29 | 20 | A549 | 4 | 4 | 3 | 14 | Huvec | 2 | 1 | 5 | 6 | Mcf7 | 1 | 1 | 0 | 7 | Hepg2 | 2 | 2 | 6 | 15 | H1hesc | 4 | 2 | 44 | 134 | K562 | Ag04450 | 2 | 2 | 24 | 37 |
| Jeck2013 | Hs68_control | 3 | 3 | 18 | 37 | Hs68_RNase | 29 | 25 | 16 | 38 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||