| ID | hsa_circ_0001290 | |||||
| Alias | hsa_circ_002109 | |||||
| Position | chr3:47139444-47147610 | |||||
| Strand | - | |||||
| Genomic length | 8166 | |||||
| Spliced sequence length | 427 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_014159 | |||||
| Gene symbol | SETD2 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | diencephalon | 79 | 56 | 91 | 90 | cerebellum | 45 | 33 | 85 | 54 | Sy5y_exp1_D4 | 5 | 5 | 18 | 26 | frontal_cortex | 322 | 121 | 80 | 85 | SY5Y_exp2_D8 | 2 | 2 | 11 | 13 | occipital_lobe | 90 | 55 | 75 | 79 | parietal_lobe | 54 | 39 | 92 | 75 | temporal_lobe | 105 | 48 | 77 | 87 | Sy5y_exp1_D2 | 5 | 5 | 14 | 14 |
| Memczak2013 | HEK293 | 1 | 1 | 3 | 1 | cd_34 | 11 | 3 | 9 | 0 | cd_19 | 21 | 7 | 6 | 9 |
| Salzman2013 | K562 | 16 | 14 | 78 | 67 | Nhek | 2 | 1 | 12 | 7 | A549 | Gm12878 | 10 | 6 | 42 | 13 | Ag04450 | 8 | 6 | 49 | 29 | H1hesc | 3 | 2 | 21 | 3 |
| Jeck2013 | Hs68_control | 7 | 6 | 31 | 57 | Hs68_RNase | 92 | 53 | 10 | 28 |
| Maass2017 | vena_cava | 2 | 2 | 5 | 12 | neutophils | 2 | 2 | 8 | 7 | platelets | 16 | 11 | 0 | 2 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||