| ID | hsa_circ_0001278 | |||||
| Alias | hsa_circ_002001 | |||||
| Position | chr3:31617887-31621588 | |||||
| Strand | + | |||||
| Genomic length | 3701 | |||||
| Spliced sequence length | 397 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_178862 | |||||
| Gene symbol | STT3B | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | temporal_lobe | 118 | 53 | 160 | 112 | diencephalon | 74 | 54 | 134 | 159 | SY5Y_exp2_D0 | 2 | 2 | 14 | 17 | Sy5y_exp1_D0 | 11 | 10 | 22 | 27 | frontal_cortex | 364 | 119 | 163 | 155 | Sy5y_exp1_D2 | 10 | 9 | 26 | 32 | occipital_lobe | 337 | 118 | 163 | 168 | SY5Y_exp2_D4 | 4 | 4 | 13 | 21 | Sy5y_exp1_D4 | 9 | 7 | 16 | 24 | cerebellum | 91 | 55 | 100 | 132 | parietal_lobe | 99 | 66 | 141 | 129 |
| Maass2017 | vena_cava | 3 | 3 | 2 | 13 | HUAEC | 3 | 3 | 19 | 22 | ada_scid | 2 | 2 | 8 | 23 | platelets | 31 | 17 | 2 | 5 | LCL | 2 | 2 | 22 | 18 |
| Jeck2013 | Hs68_control | 12 | 11 | 79 | 78 | Hs68_RNase | 237 | 89 | 3 | 31 |
| Salzman2013 | Nhek | 36 | 10 | 106 | 122 | Helas3 | 83 | 40 | 130 | 97 | K562 | 66 | 38 | 156 | 181 | Mcf7 | 30 | 8 | 3 | 22 | Sknshra | 54 | 29 | 91 | 50 | A549 | 47 | 27 | 110 | 77 | Gm12878 | 185 | 68 | 149 | 173 | H1hesc | 66 | 32 | 101 | 131 | Bj | 34 | 17 | 89 | 40 | Ag04450 | 49 | 29 | 111 | 70 | Huvec | 4 | 1 | 56 | 74 | Hepg2 | 80 | 34 | 168 | 77 |
| Memczak2013 | cd_34 | 8 | 2 | 4 | 5 | HEK293 | 1 | 1 | 3 | 5 | cd_19 | 13 | 5 | 3 | 13 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||