| ID | hsa_circ_0001178 | |||||
| Alias | hsa_circ_001637 | |||||
| Position | chr21:17135209-17138460 | |||||
| Strand | + | |||||
| Genomic length | 3251 | |||||
| Spliced sequence length | 223 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_013396 | |||||
| Gene symbol | USP25 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Jeck2013 | Hs68_control | 15 | 10 | 3 | 16 | Hs68_RNase | 218 | 97 | 1 | 13 |
| Rybak2015 | temporal_lobe | 112 | 54 | 12 | 51 | Sy5y_exp1_D0 | 2 | 2 | 2 | 10 | SY5Y_exp2_D4 | 2 | 2 | 2 | 3 | parietal_lobe | 129 | 80 | 57 | 97 | Sy5y_exp1_D4 | 6 | 5 | 0 | 12 | Sy5y_exp1_D2 | 3 | 3 | 3 | 14 | cerebellum | 114 | 86 | 58 | 75 | frontal_cortex | 422 | 148 | 42 | 93 | diencephalon | 105 | 73 | 48 | 72 | SY5Y_exp2_D0 | 4 | 4 | 2 | 14 | occipital_lobe | 204 | 95 | 41 | 81 |
| Maass2017 | vena_cava | 2 | 2 | 2 | 5 | platelets | 21 | 15 | 0 | 4 | neutophils | 9 | 9 | 0 | 9 | EPC | 2 | 2 | 0 | 7 | LCL | 2 | 2 | 3 | 3 | adipose | 3 | 3 | 2 | 14 | chondrocytes | 3 | 3 | 0 | 6 | decidua | 3 | 3 | 3 | 11 | WAS2 | 6 | 4 | 6 | 11 | HUAEC | 4 | 4 | 0 | 9 |
| Memczak2013 | cd_19 | 8 | 4 | 4 | 2 | neutr | 1 | 1 | 2 | 4 |
| Salzman2013 | Sknshra | 4 | 4 | 19 | 23 | H1hesc | 82 | 31 | 80 | 55 | Ag04450 | 65 | 34 | 51 | 62 | Gm12878 | 50 | 27 | 41 | 50 | Hepg2 | 32 | 16 | 13 | 19 | Bj | 18 | 11 | 11 | 23 | A549 | 38 | 18 | 25 | 30 | Hsmm | 2 | 1 | 2 | 1 | Helas3 | 23 | 16 | 19 | 34 | K562 | 182 | 125 | 157 | 230 | Huvec | 40 | 12 | 54 | 36 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||