| ID | hsa_circ_0001098 | |||||
| Alias | hsa_circ_001117 | |||||
| Position | chr2:215632205-215646233 | |||||
| Strand | - | |||||
| Genomic length | 14028 | |||||
| Spliced sequence length | 1204 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_000465 | |||||
| Gene symbol | BARD1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Salzman2013 | Mcf7 | 6 | 3 | 4 | 16 | H1hesc | 17 | 9 | 21 | 72 | Huvec | 2 | 2 | 10 | 8 | Nhek | 13 | 3 | 8 | 4 | Sknshra | 3 | 3 | 10 | 14 | Hepg2 | 5 | 1 | 2 | 7 | Helas3 | 2 | 1 | 10 | 17 | K562 | 18 | 13 | 70 | 35 | Bj | 4 | 4 | 7 | 13 | Gm12878 | 46 | 16 | 65 | 89 | Ag04450 | 3 | 2 | 34 | 23 | A549 | 2 | 1 | 11 | 23 |
| Memczak2013 | cd_19 | 3 | 1 | 3 | 3 | HEK293 | 1 | 1 | 3 | 4 |
| Maass2017 | adipose | 2 | 2 | 3 | 0 | WAS2 | 4 | 4 | 21 | 16 |
| Rybak2015 | occipital_lobe | 75 | 43 | 120 | 78 | diencephalon | 48 | 32 | 102 | 48 | Sy5y_exp1_D2 | 3 | 3 | 28 | 12 | SY5Y_exp2_D0 | 4 | 4 | 22 | 5 | Sy5y_exp1_D4 | 5 | 5 | 19 | 6 | temporal_lobe | 32 | 17 | 59 | 28 | frontal_cortex | 51 | 22 | 81 | 52 | parietal_lobe | 21 | 16 | 90 | 42 | SY5Y_exp2_D8 | 2 | 2 | 15 | 8 | SY5Y_exp2_D4 | 5 | 5 | 17 | 6 | cerebellum | 19 | 17 | 99 | 58 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||