| ID | hsa_circ_0000936 | |||||
| Alias | hsa_circ_000281 | |||||
| Position | chr19:41089303-41089623 | |||||
| Strand | + | |||||
| Genomic length | 320 | |||||
| Spliced sequence length | 205 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_138392 | |||||
| Gene symbol | SHKBP1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | cerebellum | 61 | 53 | 8 | 0 | occipital_lobe | 31 | 23 | 3 | 2 | frontal_cortex | 52 | 32 | 4 | 2 | Sy5y_exp1_D0 | 2 | 2 | 26 | 15 | parietal_lobe | 26 | 23 | 11 | 10 | temporal_lobe | 7 | 5 | 5 | 0 | diencephalon | 32 | 27 | 10 | 2 |
| Jeck2013 | Hs68_RNase | 546 | 198 | 69 | 48 | Hs68_control | 14 | 11 | 88 | 57 |
| Salzman2013 | H1hesc | 72 | 45 | 139 | 79 | Gm12878 | 145 | 84 | 130 | 75 | Hepg2 | 163 | 54 | 122 | 63 | Huvec | 44 | 17 | 133 | 59 | Hsmm | 69 | 10 | 167 | 36 | Nhek | 125 | 55 | 162 | 83 | Bj | 374 | 107 | 101 | 61 | K562 | 24 | 22 | 53 | 46 | Helas3 | 159 | 75 | 92 | 86 | Sknshra | 197 | 84 | 117 | 61 | A549 | 315 | 129 | 202 | 134 | Mcf7 | 117 | 22 | 169 | 82 | Nhlf | 99 | 17 | 236 | 46 | Ag04450 | 245 | 109 | 145 | 88 |
| Maass2017 | neutophils | 8 | 7 | 25 | 11 | platelets | 4 | 4 | 9 | 0 | WAS2 | 4 | 4 | 21 | 10 | HUAEC | 2 | 2 | 11 | 4 |
| Memczak2013 | neutr | 1 | 1 | 19 | 6 | cd_34 | 27 | 3 | 4 | 9 | cd_19 | 6 | 3 | 0 | 3 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||