| ID | hsa_circ_0000711 | |||||
| Alias | hsa_circ_002176 | |||||
| Position | chr16:68155889-68160513 | |||||
| Strand | + | |||||
| Genomic length | 4624 | |||||
| Spliced sequence length | 1298 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_173165 | |||||
| Gene symbol | NFATC3 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Salzman2013 | Nhlf | 68 | 8 | 0 | 0 | Nhek | 44 | 19 | 20 | 9 | Hmec | Hepg2 | 654 | 102 | 97 | 17 | Helas3 | 501 | 133 | 107 | 29 | Gm12878 | 246 | 90 | 54 | 32 | Mcf7 | 47 | 13 | 6 | 1 | K562 | 570 | 240 | 133 | 156 | Ag04450 | 119 | 60 | 9 | 14 | Sknshra | 82 | 41 | 25 | 18 | Huvec | 62 | 16 | 28 | 11 | A549 | 92 | 43 | 28 | 16 | Hsmm | 32 | 7 | 1 | 0 | H1hesc | 131 | 60 | 34 | 23 | Bj | 74 | 31 | 16 | 7 |
| Rybak2015 | occipital_lobe | 89 | 39 | 8 | 22 | temporal_lobe | 36 | 21 | 6 | 10 | parietal_lobe | 47 | 36 | 21 | 23 | SY5Y_exp2_D0 | 11 | 11 | 7 | 13 | Sy5y_exp1_D4 | 9 | 7 | 9 | 18 | diencephalon | 61 | 40 | 8 | 24 | Sy5y_exp1_D0 | 29 | 21 | 7 | 22 | frontal_cortex | 95 | 40 | 13 | 23 | cerebellum | 41 | 29 | 28 | 27 | Sy5y_exp1_D2 | 25 | 20 | 8 | 19 |
| Memczak2013 | cd_34 | 97 | 16 | 3 | 6 | HEK293 | 1 | 1 | 0 | 2 | neutr | 2 | 1 | 1 | 8 | cd_19 | 99 | 28 | 9 | 17 |
| Jeck2013 | Hs68_control | 42 | 31 | 2 | 14 | Hs68_RNase | 503 | 146 | 7 | 4 |
| Maass2017 | MSC_047 | 2 | 2 | 3 | 6 | VSMC | 2 | 2 | 0 | 0 | chondrocytes | 4 | 4 | 0 | 3 | right_atrium | 3 | 3 | 0 | 0 | platelets | 9 | 6 | 0 | 2 | EPC | 2 | 2 | 3 | 4 | WAS2 | 6 | 3 | 2 | 9 | adipose | 11 | 10 | 2 | 3 | LCL | 3 | 3 | 0 | 0 | vena_cava | 5 | 5 | 0 | 2 | ada_scid | 3 | 3 | 0 | 0 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||