| ID | hsa_circ_0000607 | |||||
| Alias | hsa_circ_001567 | |||||
| Position | chr15:62299506-62306191 | |||||
| Strand | - | |||||
| Genomic length | 6685 | |||||
| Spliced sequence length | 606 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_020821 | |||||
| Gene symbol | VPS13C | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Memczak2013 | cd_19 | 7 | 3 | 20 | 10 | HEK293 | 1 | 1 | 2 | 0 |
| Salzman2013 | Huvec | K562 | 16 | 12 | 253 | 69 | Gm12878 | Helas3 | 1 | 1 | 30 | 3 | Sknshra | 1 | 1 | 72 | 15 | Ag04450 | 1 | 1 | 80 | 20 |
| Maass2017 | decidua | 3 | 3 | 5 | 5 | neutophils | 2 | 2 | 0 | 2 | platelets | 22 | 15 | 2 | 6 | vena_cava | 7 | 6 | 4 | 7 | right_atrium | 4 | 3 | 5 | 7 | adipose | 15 | 9 | 7 | 10 |
| Rybak2015 | diencephalon | 442 | 151 | 87 | 84 | cerebellum | 238 | 106 | 84 | 92 | frontal_cortex | 1236 | 199 | 76 | 77 | Sy5y_exp1_D0 | 6 | 6 | 8 | 14 | SY5Y_exp2_D0 | 4 | 2 | 11 | 30 | parietal_lobe | 350 | 110 | 70 | 75 | occipital_lobe | 945 | 175 | 81 | 88 | Sy5y_exp1_D4 | 6 | 6 | 11 | 15 | SY5Y_exp2_D4 | 5 | 4 | 14 | 18 | temporal_lobe | 824 | 138 | 53 | 39 |
| Jeck2013 | Hs68_RNase | 113 | 44 | 4 | 6 | Hs68_control | 16 | 12 | 18 | 23 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||