| ID | hsa_circ_0000497 | |||||
| Alias | hsa_circ_000839 | |||||
| Position | chr13:78293666-78327493 | |||||
| Strand | + | |||||
| Genomic length | 33827 | |||||
| Spliced sequence length | 788 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_001040153 | |||||
| Gene symbol | SLAIN1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | cerebellum | 163 | 108 | 117 | 168 | diencephalon | 257 | 144 | 110 | 157 | Sy5y_exp1_D4 | 2 | 2 | 7 | 22 | Sy5y_exp1_D0 | 3 | 3 | 14 | 25 | occipital_lobe | 1305 | 299 | 195 | 243 | SY5Y_exp2_D0 | 3 | 3 | 5 | 19 | Sy5y_exp1_D2 | 4 | 4 | 20 | 29 | parietal_lobe | 720 | 209 | 202 | 210 | frontal_cortex | 2293 | 351 | 184 | 244 | temporal_lobe | 1254 | 267 | 132 | 179 |
| Salzman2013 | Mcf7 | Gm12878 | 67 | 30 | 47 | 97 | H1hesc | 44 | 16 | 54 | 81 |
| Memczak2013 | HEK293 | 1 | 1 | 0 | 0 | neutr | 2 | 1 | 0 | 0 |
| Maass2017 | WAS2 | 7 | 7 | 7 | 18 | LCL | 3 | 3 | 5 | 10 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||