| ID | hsa_circ_0000471 | |||||
| Alias | hsa_circ_002029 | |||||
| Position | chr13:33091993-33101669 | |||||
| Strand | - | |||||
| Genomic length | 9676 | |||||
| Spliced sequence length | 388 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_033111 | |||||
| Gene symbol | N4BP2L2 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Salzman2013 | Helas3 | 55 | 28 | 22 | 2 | K562 | 67 | 42 | 52 | 1 | Bj | 60 | 23 | 15 | 2 | Sknshra | 80 | 30 | 30 | 2 | H1hesc | 27 | 13 | 31 | 0 | Huvec | 15 | 5 | 14 | 1 | Hepg2 | 72 | 14 | 9 | 0 | Gm12878 | 32 | 19 | 23 | 0 | Ag04450 | 108 | 46 | 22 | 2 | Nhek | 27 | 11 | 11 | 5 | A549 | 64 | 31 | 11 | 1 |
| Maass2017 | decidua | 8 | 7 | 2 | 0 | EPC | 3 | 3 | 0 | 0 | vena_cava | 37 | 26 | 14 | 5 | fibroblasts | 3 | 3 | 7 | 0 | VSMC | 3 | 3 | 5 | 3 | HUAEC | 3 | 3 | 9 | 2 | osteocytes | 3 | 3 | 5 | 0 | neutophils | 17 | 15 | 8 | 0 | ada_scid | 2 | 2 | 5 | 0 | platelets | 76 | 29 | 2 | 0 | right_atrium | 26 | 21 | 8 | 3 | adipose | 9 | 9 | 0 | 4 | muscle | 11 | 6 | 6 | 0 | placenta | 2 | 2 | 4 | 0 | umbilical_cord | 2 | 2 | 6 | 0 | cortex | 13 | 11 | 3 | 0 | WAS2 | 10 | 8 | 3 | 0 |
| Memczak2013 | HEK293 | 2 | 2 | 5 | 1 | cd_19 | 12 | 7 | 3 | 0 | neutr | 10 | 6 | 6 | 1 |
| Jeck2013 | Hs68_RNase | 439 | 131 | 1 | 8 | Hs68_control | 21 | 16 | 63 | 7 |
| Rybak2015 | Sy5y_exp1_D0 | 19 | 16 | 17 | 0 | parietal_lobe | 624 | 200 | 108 | 38 | cerebellum | 402 | 193 | 127 | 23 | frontal_cortex | 2238 | 347 | 113 | 57 | Sy5y_exp1_D4 | 14 | 10 | 10 | 0 | temporal_lobe | 743 | 182 | 49 | 26 | Sy5y_exp1_D2 | 14 | 11 | 15 | 0 | SY5Y_exp2_D4 | 7 | 6 | 11 | 0 | SY5Y_exp2_D0 | 10 | 10 | 9 | 0 | SY5Y_exp2_D8 | 4 | 3 | 6 | 2 | diencephalon | 592 | 223 | 80 | 61 | occipital_lobe | 1722 | 346 | 110 | 47 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||