| ID | hsa_circ_0000419 | |||||
| Alias | hsa_circ_000568 | |||||
| Position | chr12:70193988-70195501 | |||||
| Strand | + | |||||
| Genomic length | 1513 | |||||
| Spliced sequence length | 242 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_175623 | |||||
| Gene symbol | RAB3IP | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | frontal_cortex | 517 | 131 | 33 | 53 | Sy5y_exp1_D0 | 3 | 3 | 5 | 10 | diencephalon | 271 | 125 | 53 | 56 | cerebellum | 320 | 156 | 56 | 61 | temporal_lobe | 150 | 52 | 31 | 36 | occipital_lobe | 217 | 101 | 29 | 52 | SY5Y_exp2_D0 | 3 | 3 | 4 | 4 | SY5Y_exp2_D4 | 4 | 3 | 8 | 2 | SY5Y_exp2_D8 | 3 | 2 | 7 | 11 | Sy5y_exp1_D4 | 5 | 5 | 12 | 14 | Sy5y_exp1_D2 | 5 | 5 | 6 | 7 | parietal_lobe | 437 | 145 | 46 | 49 |
| Jeck2013 | Hs68_RNase | 54 | 36 | 2 | 0 | Hs68_control | 2 | 2 | 10 | 10 |
| Salzman2013 | Sknshra | 42 | 20 | 6 | 3 | Ag04450 | 6 | 3 | 1 | 1 | Helas3 | 10 | 5 | 4 | 8 | Gm12878 | 134 | 62 | 27 | 13 | Nhek | 50 | 19 | 6 | 10 | Bj | 7 | 5 | 0 | 0 | Huvec | 22 | 4 | 3 | 2 | K562 | 18 | 14 | 16 | 13 | H1hesc | 22 | 16 | 23 | 14 | A549 | 15 | 9 | 5 | 1 | Hepg2 | 8 | 3 | 2 | 3 |
| Maass2017 | ada_scid | 2 | 2 | 0 | 4 | WAS2 | 6 | 5 | 2 | 5 | muscle | 3 | 3 | 0 | 0 | umbilical_cord | 6 | 5 | 0 | 0 | neutophils | 8 | 5 | 0 | 0 | HUAEC | 3 | 3 | 3 | 3 | EPC | 3 | 2 | 0 | 0 | LCL | 3 | 2 | 2 | 3 | adipose | 5 | 5 | 0 | 0 | decidua | 3 | 3 | 0 | 0 | right_atrium | 7 | 6 | 7 | 5 | vena_cava | 27 | 18 | 3 | 5 | platelets | 30 | 15 | 3 | 2 | VSMC | 2 | 2 | 0 | 2 |
| Memczak2013 | neutr | 2 | 2 | 0 | 0 | |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||