| ID | hsa_circ_0000396 | |||||
| Alias | hsa_circ_001471 | |||||
| Position | chr12:46622935-46637097 | |||||
| Strand | - | |||||
| Genomic length | 14162 | |||||
| Spliced sequence length | 522 | |||||
| Annotation |
| |||||
| Repeats | LINE | |||||
| Best transcript | NM_030674 | |||||
| Gene symbol | SLC38A1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | Sy5y_exp1_D2 | 4 | 4 | 18 | 23 | Sy5y_exp1_D0 | 9 | 9 | 27 | 31 | cerebellum | 224 | 114 | 199 | 160 | diencephalon | 323 | 136 | 183 | 159 | frontal_cortex | 985 | 218 | 227 | 174 | temporal_lobe | 504 | 128 | 113 | 101 | Sy5y_exp1_D4 | 4 | 3 | 21 | 16 | occipital_lobe | 778 | 191 | 212 | 187 | SY5Y_exp2_D4 | 2 | 2 | 18 | 12 | parietal_lobe | 251 | 106 | 176 | 145 | SY5Y_exp2_D0 | 2 | 2 | 33 | 25 |
| Salzman2013 | K562 | Bj | 11 | 6 | 83 | 100 | Hsmm | Nhek | 27 | 20 | 97 | 194 | Mcf7 | 12 | 5 | 12 | 36 | Helas3 | 29 | 20 | 186 | 176 | Sknshra | 1 | 1 | 49 | 59 | Huvec | Ag04450 | 11 | 11 | 93 | 135 | Gm12878 | 49 | 32 | 93 | 194 | A549 | 14 | 11 | 114 | 153 | Hepg2 | 22 | 16 | 170 | 182 | H1hesc | 18 | 12 | 144 | 235 |
| Maass2017 | VSMC | 2 | 2 | 9 | 7 | vena_cava | 3 | 3 | 9 | 6 | LCL | 2 | 2 | 13 | 11 | ada_scid | 3 | 3 | 10 | 11 | osteocytes | 2 | 2 | 6 | 9 | WAS2 | 7 | 7 | 15 | 16 |
| Memczak2013 | HEK293 | 2 | 2 | 12 | 18 | cd_19 | 4 | 4 | 21 | 14 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||