| ID | hsa_circ_0000288 | |||||
| Alias | hsa_circ_000112 | |||||
| Position | chr11:34111725-34112225 | |||||
| Strand | + | |||||
| Genomic length | 500 | |||||
| Spliced sequence length | 261 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_005898 | |||||
| Gene symbol | CAPRIN1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Jeck2013 | Hs68_control | 6 | 6 | 78 | 110 | Hs68_RNase | 22 | 13 | 31 | 32 |
| Memczak2013 | cd_34 | 12 | 2 | 0 | 3 | |
| Rybak2015 | diencephalon | 7 | 7 | 186 | 304 | frontal_cortex | 68 | 33 | 161 | 226 | cerebellum | 14 | 12 | 205 | 282 | occipital_lobe | 37 | 21 | 195 | 223 | parietal_lobe | 10 | 7 | 162 | 193 |
| Maass2017 | platelets | 2 | 2 | 4 | 5 | |
| Salzman2013 | Nhek | 19 | 5 | 243 | 231 | Ag04450 | 28 | 11 | 191 | 164 | H1hesc | 18 | 7 | 337 | 288 | Gm12878 | 7 | 4 | 273 | 266 | Huvec | 3 | 1 | 170 | 128 | K562 | 24 | 17 | 464 | 609 | Hepg2 | 37 | 9 | 349 | 251 | Helas3 | 22 | 8 | 258 | 172 | Sknshra | 1 | 1 | 177 | 121 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||