circBase

ID	hsa_circ_0000284
Alias	hsa_circ_000016
Position	chr11:33307958-33309057
Strand	+
Genomic length	1099
Spliced sequence length	1099
Annotation	ANNOTATED CDS coding INTERNAL OVCODE OVEXON UTR5
Repeats	None
Best transcript	NM_005734
Gene symbol	HIPK3
Experimental exidence	Memczak2013
Scores	circRNA study	Sample	total reads circular junction	unique reads circular junction	unique reads linear-5' junctions	unique reads linear-3' junctions
	Maass2017	muscle	9	8	9	9
		osteocytes	6	5	0	4
		WAS2	23	17	10	8
		VSMC	17	13	0	3
		chondrocytes	14	12	0	0
		MSC	5	5	2	3
		LCL	14	12	7	7
		fibroblasts	14	10	2	4
		vena_cava	27	19	9	13
		adipose	25	18	10	5
		ada_scid	8	7	7	5
		umbilical_cord	2	2	2	2
		placenta	2	2	2	4
		EPC	12	10	2	2
		neutophils	4	4	10	15
		MSC_047	22	15	0	2
		right_atrium	17	13	12	12
		platelets	113	37	4	5
		cortex	6	5	2	2
		decidua	10	9	4	9
		HUAEC	16	10	3	6
	Rybak2015	Sy5y_exp1_D2	51	33	7	10
		parietal_lobe	1369	292	98	71
		SY5Y_exp2_D4	22	17	7	7
		SY5Y_exp2_D8	18	11	6	6
		frontal_cortex	5246	662	101	77
		Sy5y_exp1_D4	41	32	12	10
		cerebellum	812	281	98	64
		temporal_lobe	1382	271	53	34
		diencephalon	1198	344	98	98
		Sy5y_exp1_D0	69	41	5	13
		SY5Y_exp2_D0	26	13	10	9
		occipital_lobe	3655	589	84	80
	Memczak2013	cd_19	27	16	5	9
		HEK293	3	3	0	2
		neutr	1	1	2	7
		cd_34	21	1	4	0
	Salzman2013	Sknshra	436	103	28	65
		H1hesc	208	77	15	32
		Gm12878	229	103	27	53
		Hsmm	96	22	10	23
		Ag04450	823	169	42	46
		Nhlf	71	8	2	15
		Bj	765	149	39	50
		Helas3	515	123	40	46
		K562	230	146	15	50
		Nhek	389	104	48	96
		A549	481	125	44	56
		Mcf7	44	9	4	21
		Hepg2	416	99	32	41
		Huvec	160	37	29	41
	Jeck2013	Hs68_RNase	3296	411	1	19
	Jeck2013	Hs68_control	404	103	23	35
Aligned reads	Memczak 2013 circRNA study (pooled samples)