circBase

ID	hsa_circ_0000284
Alias	hsa_circ_000016
Position	chr11:33307958-33309057
Strand	+
Genomic length	1099
Spliced sequence length	1099
Annotation	ANNOTATED CDS coding INTERNAL OVCODE OVEXON UTR5
Repeats	None
Best transcript	NM_005734
Gene symbol	HIPK3
Experimental exidence	Memczak2013
Scores	circRNA study	Sample	total reads circular junction	unique reads circular junction	unique reads linear-5' junctions	unique reads linear-3' junctions
	Rybak2015	diencephalon	1198	344	98	98
		parietal_lobe	1369	292	98	71
		temporal_lobe	1382	271	53	34
		Sy5y_exp1_D4	41	32	12	10
		Sy5y_exp1_D0	69	41	5	13
		occipital_lobe	3655	589	84	80
		SY5Y_exp2_D8	18	11	6	6
		SY5Y_exp2_D0	26	13	10	9
		SY5Y_exp2_D4	22	17	7	7
		Sy5y_exp1_D2	51	33	7	10
		cerebellum	812	281	98	64
		frontal_cortex	5246	662	101	77
	Maass2017	platelets	113	37	4	5
		ada_scid	8	7	7	5
		muscle	9	8	9	9
		WAS2	23	17	10	8
		vena_cava	27	19	9	13
		umbilical_cord	2	2	2	2
		LCL	14	12	7	7
		neutophils	4	4	10	15
		placenta	2	2	2	4
		HUAEC	16	10	3	6
		MSC	5	5	2	3
		VSMC	17	13	0	3
		osteocytes	6	5	0	4
		MSC_047	22	15	0	2
		decidua	10	9	4	9
		fibroblasts	14	10	2	4
		EPC	12	10	2	2
		chondrocytes	14	12	0	0
		cortex	6	5	2	2
		right_atrium	17	13	12	12
		adipose	25	18	10	5
	Memczak2013	neutr	1	1	2	7
		cd_34	21	1	4	0
		HEK293	3	3	0	2
		cd_19	27	16	5	9
	Salzman2013	Gm12878	229	103	27	53
		Hepg2	416	99	32	41
		Huvec	160	37	29	41
		Sknshra	436	103	28	65
		Mcf7	44	9	4	21
		Hsmm	96	22	10	23
		Nhlf	71	8	2	15
		Helas3	515	123	40	46
		Nhek	389	104	48	96
		Ag04450	823	169	42	46
		H1hesc	208	77	15	32
		A549	481	125	44	56
		Bj	765	149	39	50
		K562	230	146	15	50
	Jeck2013	Hs68_RNase	3296	411	1	19
	Jeck2013	Hs68_control	404	103	23	35
Aligned reads	Memczak 2013 circRNA study (pooled samples)